Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_I23
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            24   8.4  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   8.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   8.4  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 72  VSGHPDLKNYVITAQHPQNGSQQ 4
           + GH  +   +I AQ+PQN  ++
Sbjct: 174 IMGHVSILTQLIVAQNPQNSKEE 196


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = -3

Query: 195 FAFAASISNKIMFKTYI*SSSVCLTVEVFC*AFEL-------GFIDRRVSGHPDLKNYVI 37
           FA     S +I F+T     ++   + +FC  F+L       G + + V  HP+ KN  +
Sbjct: 335 FAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNKKNTSV 394

Query: 36  TAQHP 22
           +   P
Sbjct: 395 SQSQP 399


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 76  SVDESQLKGLAKYFNSQTNRGRLNVGFEHYFI*N*CSKGKLR 201
           ++  S L   A +  S+ +R RLN+  E   + N  +KG+L+
Sbjct: 363 NIASSILYSTASFSRSKPDRPRLNLSLELKLMQNELNKGQLK 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,198
Number of Sequences: 5004
Number of extensions: 25082
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)