Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_I17
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0003 + 16227213-16227220,16229085-16229282,16229565-162296... 35 0.061
04_01_0042 + 473912-474058,474208-474349,474442-476264 31 0.57
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 31 0.99
04_01_0052 - 548383-548494,548523-548592,549184-549364 30 1.3
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 30 1.7
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 30 1.7
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 30 1.7
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 30 1.7
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 3.0
05_01_0124 + 852358-853257 29 3.0
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 29 4.0
12_02_0880 + 23965602-23965614,23966150-23966370,23966467-239665... 27 9.2
07_03_0996 - 23197758-23198705 27 9.2
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 27 9.2
>03_04_0003 +
16227213-16227220,16229085-16229282,16229565-16229657,
16230152-16230218,16230377-16230467,16230558-16230610,
16230784-16230848,16230905-16230968
Length = 212
Score = 34.7 bits (76), Expect = 0.061
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Frame = +3
Query: 171 IANPYLQSLGAP---HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP 341
+ +P +SL AP +D F +L LK A P +P+ ++ ++ +
Sbjct: 19 LPSPTYRSLAAPVTKPVDKFA-LLPAFLKVAP----PPTCIIPASLLIRFDAIQSLYNSV 73
Query: 342 NVPMDTVGVK--SQVVLPTECRQRAATYKGELXIRVTLCIDGRSVTIERS----LGYLPI 503
V + +V V+ ++ + P CR TY + + + G+ ++R +GYLPI
Sbjct: 74 RVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV-GKQYELKRKPNFIIGYLPI 132
Query: 504 MIKSKMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
M++S C L EL E + G F KG
Sbjct: 133 MLRSHACVLNGKDEAELARYGECPLDPGGYFIVKG 167
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 389 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 288
WEDHL + + G + F F+ FDLF TR
Sbjct: 298 WEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTR 333
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 30.7 bits (66), Expect = 0.99
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +3
Query: 102 PKKLAQNPSLAYTSHPDY--RKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPS 275
P KL+ P+LA + P KPPK A P + P + + ++A P
Sbjct: 121 PPKLSP-PNLAKATKPSRLAAKPPKKAAPGPELDPKPRKKAQRVSFQEDAAMSVA---PG 176
Query: 276 EFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTE 395
SGEKVKV+ D+AA P V + + K VV E
Sbjct: 177 -----SGEKVKVSTDDAAGHTPMVAVRALEKKVSVVASAE 211
>04_01_0052 - 548383-548494,548523-548592,549184-549364
Length = 120
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 180 PYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDT 359
P L S A DS++ ++D + A+ ++ ++ G +V + +DE+A A + M T
Sbjct: 48 PALDSFAAQEFDSYD-VIDAVVSGAVVVVVEDAVDVFEGREVSIYVDESAAACVPMLMKT 106
Query: 360 VG 365
+G
Sbjct: 107 IG 108
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 389 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 288
WE+HL + + G + F F+ FDLF TR
Sbjct: 39 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTR 74
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 389 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 288
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTR 328
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 389 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 288
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTR 328
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 389 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 288
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTR 328
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 102 PKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLD 236
P + A PS+ S DY KP + + L S+G P S N LD
Sbjct: 358 PVEPAVGPSIDLLSGDDYFKPEPVNSQALVSVGNPPAASANNTLD 402
>05_01_0124 + 852358-853257
Length = 299
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 492 YLPIMIKSKMCHLADLSPE--ELIEKNEHADEWGWIFCNKGP*ASSP 626
Y+P + S+MCHLA+L + + D +G C++ + SP
Sbjct: 106 YVPPRLSSRMCHLANLDGSLCAVFDNRVEGDVYGLFTCSEPSASPSP 152
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 261 DLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTEC 398
++L S+ ++P G+K +++ DE + D +KSQ L TEC
Sbjct: 331 EVLLSQKKMPDGQKEEISQDEYKRGISSWNFDMDDLKSQASLITEC 376
>12_02_0880 +
23965602-23965614,23966150-23966370,23966467-23966503,
23966917-23967100,23967263-23967411,23967515-23967745,
23967850-23968039,23968124-23968433,23968658-23969050
Length = 575
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 508 IIMGK*PKDLSMVTDLPSMHRVTLIXNSPLYVAAL 404
+++ P L+ D+PS+ V + NSP+YVA L
Sbjct: 524 VLLNGAPLQLTGDGDIPSLPPVMVSVNSPIYVAPL 558
>07_03_0996 - 23197758-23198705
Length = 315
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 328 AASSIVTLTFSPLGNSNSDGNRSAIANFRPSSS 230
AA++ T T + NSNSDG SA SSS
Sbjct: 154 AAAAAATPTITTTSNSNSDGAGSACGGSSSSSS 186
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 123 PSLAYTS-HP-DYRKPPKIANPYLQSLGAPHIDS 218
P A+ S HP D+ P + NP QSL HI S
Sbjct: 1713 PGSAWPSNHPVDFTPTPHVVNPISQSLADTHIQS 1746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,525,911
Number of Sequences: 37544
Number of extensions: 329363
Number of successful extensions: 775
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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