Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_I17
(626 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase... 130 2e-30
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro... 130 2e-30
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p... 130 2e-30
AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p pro... 38 0.011
AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA... 38 0.011
BT003265-1|AAO25022.1| 1176|Drosophila melanogaster LD22387p pro... 37 0.019
AE014297-1804|AAF55024.1| 1176|Drosophila melanogaster CG3180-PA... 37 0.019
X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase... 36 0.034
X05709-1|CAA29180.2| 1123|Drosophila melanogaster RNA polymerase... 36 0.034
L09700-1|AAA28569.1| 399|Drosophila melanogaster GTP-binding pr... 31 0.97
AE014296-2779|AAF49429.2| 399|Drosophila melanogaster CG12232-P... 31 0.97
AY070546-1|AAL48017.1| 564|Drosophila melanogaster LD27030p pro... 31 1.7
AE013599-592|AAF59131.1| 564|Drosophila melanogaster CG2158-PA ... 31 1.7
AE013599-1038|AAF58834.3| 381|Drosophila melanogaster CG33478-P... 29 6.8
M59501-1|AAA28994.1| 462|Drosophila melanogaster tube protein p... 28 9.0
>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
second largestsubunit protein.
Length = 1129
Score = 130 bits (313), Expect = 2e-30
Identities = 57/157 (36%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +3
Query: 141 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 320
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 321 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELXIRVTLCIDG-RSVTIERSLGYL 497
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G + I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 498 PIMIKSKMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
PIM++SK C+L +PEE+++ EH EWG IF +G
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRG 173
>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
protein.
Length = 1129
Score = 130 bits (313), Expect = 2e-30
Identities = 57/157 (36%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +3
Query: 141 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 320
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 321 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELXIRVTLCIDG-RSVTIERSLGYL 497
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G + I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 498 PIMIKSKMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
PIM++SK C+L +PEE+++ EH EWG IF +G
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRG 173
>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
protein.
Length = 1129
Score = 130 bits (313), Expect = 2e-30
Identities = 57/157 (36%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +3
Query: 141 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 320
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 321 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELXIRVTLCIDG-RSVTIERSLGYL 497
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G + I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 498 PIMIKSKMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
PIM++SK C+L +PEE+++ EH EWG IF +G
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRG 173
>AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p
protein.
Length = 1146
Score = 37.9 bits (84), Expect = 0.011
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 4/151 (2%)
Frame = +3
Query: 168 KIANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV-KVTIDEAAFAK 338
K+ +LQ G HIDSFN+ ++ +K + +E + + + + K
Sbjct: 45 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVK---ANELVTSGADPLFYLKYLDVRVGK 101
Query: 339 PNVPMDTVGVKSQVVLPTECRQRAATYKGELXIRVTLCIDGRSVTIERSL-GYLPIMIKS 515
P++ D + ++ P ECR R TY + + + + + L G +P+M++
Sbjct: 102 PDID-DGFNI-TKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRC 159
Query: 516 KMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
C L S EL + NE + G F +G
Sbjct: 160 SNCALTGKSEFELSKLNECPLDPGGYFVVRG 190
>AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA
protein.
Length = 1137
Score = 37.9 bits (84), Expect = 0.011
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 4/151 (2%)
Frame = +3
Query: 168 KIANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV-KVTIDEAAFAK 338
K+ +LQ G HIDSFN+ ++ +K + +E + + + + K
Sbjct: 36 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVK---ANELVTSGADPLFYLKYLDVRVGK 92
Query: 339 PNVPMDTVGVKSQVVLPTECRQRAATYKGELXIRVTLCIDGRSVTIERSL-GYLPIMIKS 515
P++ D + ++ P ECR R TY + + + + + L G +P+M++
Sbjct: 93 PDID-DGFNI-TKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRC 150
Query: 516 KMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
C L S EL + NE + G F +G
Sbjct: 151 SNCALTGKSEFELSKLNECPLDPGGYFVVRG 181
>BT003265-1|AAO25022.1| 1176|Drosophila melanogaster LD22387p
protein.
Length = 1176
Score = 37.1 bits (82), Expect = 0.019
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Frame = +3
Query: 99 NPKKLAQNPSLAYTSHPDYRKPPKIA-NPYLQSLGA--PHIDSFNYMLDDGLKFAIADL- 266
N ++L + + SH +++ I N Y G +DSF+ + ++ + D
Sbjct: 5 NEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 64
Query: 267 ---LPSEFELPSGE-----KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 422
L +E + SGE + + ++ +KP + G S + +P E R R TY
Sbjct: 65 AIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT-HWEKDGSPSPM-MPNEARLRNLTYS 122
Query: 423 GELXIRVTLC--IDGRS-VTIERS---LGYLPIMIKSKMCHLADLSPEELIEKNE-HADE 581
L + +T ++G V + +G +PIM++S C L+ L+ +L E NE D
Sbjct: 123 APLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDP 182
Query: 582 WGWIFCN 602
G+ N
Sbjct: 183 GGYFIIN 189
>AE014297-1804|AAF55024.1| 1176|Drosophila melanogaster CG3180-PA
protein.
Length = 1176
Score = 37.1 bits (82), Expect = 0.019
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Frame = +3
Query: 99 NPKKLAQNPSLAYTSHPDYRKPPKIA-NPYLQSLGA--PHIDSFNYMLDDGLKFAIADL- 266
N ++L + + SH +++ I N Y G +DSF+ + ++ + D
Sbjct: 5 NEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 64
Query: 267 ---LPSEFELPSGE-----KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 422
L +E + SGE + + ++ +KP + G S + +P E R R TY
Sbjct: 65 AIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT-HWEKDGSPSPM-MPNEARLRNLTYS 122
Query: 423 GELXIRVTLC--IDGRS-VTIERS---LGYLPIMIKSKMCHLADLSPEELIEKNE-HADE 581
L + +T ++G V + +G +PIM++S C L+ L+ +L E NE D
Sbjct: 123 APLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDP 182
Query: 582 WGWIFCN 602
G+ N
Sbjct: 183 GGYFIIN 189
>X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase
III second-largestsubunit protein.
Length = 1135
Score = 36.3 bits (80), Expect = 0.034
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Frame = +3
Query: 168 KIANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV-KVTIDEAAFAK 338
K+ +LQ G HIDSFN+ ++ +K + +E + + + + K
Sbjct: 36 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVK---ANELVTSGADPLFYLKYLDVRVGK 92
Query: 339 PNVPMDTVGVKSQVVLPTECRQRAATYKGELXIRVTLCIDGRSVTIERSL-GYLPIMIKS 515
P++ D + ++ P ECR R TY + + + + + L G +P+M++S
Sbjct: 93 PDID-DGFNI-TKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRS 150
Query: 516 KMCHLADLSPEELIEKNEHADEWGWIFCNKG 608
C L S EL + NE + G F +G
Sbjct: 151 N-CALTGKSEFELSKLNECPLDPGGYFVVRG 180
>X05709-1|CAA29180.2| 1123|Drosophila melanogaster RNA polymerase
protein.
Length = 1123
Score = 36.3 bits (80), Expect = 0.034
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +3
Query: 381 VLPTECRQRAATYKGELXIRVTLC--IDGRS-VTIERS---LGYLPIMIKSKMCHLADLS 542
++P E R R TY L + +T ++G V + +G +PIM++S C L+ L+
Sbjct: 56 MMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLT 115
Query: 543 PEELIEKNE-HADEWGWIFCN 602
+L E NE D G+ N
Sbjct: 116 DRDLTELNECPLDPGGYFIIN 136
>L09700-1|AAA28569.1| 399|Drosophila melanogaster GTP-binding
protein alpha-subunit protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +3
Query: 183 YLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 362
Y +S P +DS Y LD+ ++ + A+ +PS ++ K+ I + F P +P
Sbjct: 153 YDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQITFRVP-IPKSMG 211
Query: 363 GVKSQ 377
G + Q
Sbjct: 212 GGEQQ 216
>AE014296-2779|AAF49429.2| 399|Drosophila melanogaster CG12232-PA
protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +3
Query: 183 YLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 362
Y +S P +DS Y LD+ ++ + A+ +PS ++ K+ I + F P +P
Sbjct: 153 YDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQITFRVP-IPKSMG 211
Query: 363 GVKSQ 377
G + Q
Sbjct: 212 GGEQQ 216
>AY070546-1|AAL48017.1| 564|Drosophila melanogaster LD27030p
protein.
Length = 564
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -2
Query: 427 SPLYVAALCR-HSVGRTT*DLTPTVSMGTLGLANA----ASSIVTLTFSPLGNSNSDGN- 266
SPL C S G TT TP VS G+ A +SSI +LT P G + SD
Sbjct: 290 SPLAKKPNCTITSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTP 349
Query: 265 RSAIANF 245
+S+I +F
Sbjct: 350 KSSIFSF 356
>AE013599-592|AAF59131.1| 564|Drosophila melanogaster CG2158-PA
protein.
Length = 564
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -2
Query: 427 SPLYVAALCR-HSVGRTT*DLTPTVSMGTLGLANA----ASSIVTLTFSPLGNSNSDGN- 266
SPL C S G TT TP VS G+ A +SSI +LT P G + SD
Sbjct: 290 SPLAKKPNCTITSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTP 349
Query: 265 RSAIANF 245
+S+I +F
Sbjct: 350 KSSIFSF 356
>AE013599-1038|AAF58834.3| 381|Drosophila melanogaster CG33478-PA,
isoform A protein.
Length = 381
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +1
Query: 181 RTFKVLERLT*IHSIICWTMA*NLL*LIYCHRNLSYL 291
R ++++ ++ +H I+ W + +LL +++ NLSY+
Sbjct: 27 RRWRIIHQVNYVHVIVFWVLLFDLLLVLHVMANLSYM 63
>M59501-1|AAA28994.1| 462|Drosophila melanogaster tube protein
protein.
Length = 462
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -2
Query: 490 PKDLSMVTDLPSMHRVTLIXNSPLYVAALCRHSVGRTT*DLTPTVSMGTLGLANA 326
P + + TD P++ R+TL+ ++ V + H+ + + TPT S L + +A
Sbjct: 308 PSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTPTASSNNLPMISA 362
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,837,289
Number of Sequences: 53049
Number of extensions: 576907
Number of successful extensions: 1307
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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