Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_I17
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.46 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 412 AALCRHSVGRTT*DLTPTVSMGTLGLANAASSIVTLTFSPLGNSNSDGNRSAIANFRPSS 233
           A + R S    T   T T   G+L  + A S +  +  S     N D N    A   P+S
Sbjct: 218 AQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNS 277

Query: 232 SI 227
           S+
Sbjct: 278 SL 279


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 4/10 (40%), Positives = 8/10 (80%)
 Frame = +3

Query: 567 EHADEWGWIF 596
           +H D+W W++
Sbjct: 622 QHLDQWNWVY 631


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 477 ERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGWI 593
           E++ G   I +KSK    A+    + +E+NE  DE+  I
Sbjct: 145 EKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTI 183


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 373 LKWSSQQNAGRELLH 417
           LKW  ++  G E+LH
Sbjct: 86  LKWDPKEYGGVEMLH 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,246
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)