Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_I15
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.7  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   8.6  

>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 58  NCFNFLSINNKYSVVYVTVPNDE 126
           N +N+ + NN Y  +Y  + N E
Sbjct: 320 NNYNYNNYNNNYKPLYYNIINIE 342


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 220 NEINEDKETLLMIKTR 267
           N  NED E L+M+K R
Sbjct: 645 NRHNEDMEKLMMLKHR 660


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 184 SLHRQQAYSSPDHDL*FFQLHHW 116
           SL RQ    SPD  L   ++++W
Sbjct: 511 SLIRQSIIESPDKQLTLNEIYNW 533


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  FNFLSINNKYSVVYVTVPND 123
           F+FL + + Y V+ V + ND
Sbjct: 69  FSFLILVSSYIVILVNLRND 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,129
Number of Sequences: 438
Number of extensions: 2872
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)