Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_I10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.3  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   4.1  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.1  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.4  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   9.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.5  

>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 493 THRWAQMYYFAAFIVIFQIGWAAVQISHLSLIPEL 597
           T++ A ++    FI++F  GWAA  I  + L+P L
Sbjct: 42  TYKEAFVFNTVVFIIVFLTGWAAKSII-VKLLPSL 75


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 223 NDVCASLWFTYFLVYFKLVLEFSNVQS 303
           N VC S +F ++LV+  LVL  S + S
Sbjct: 732 NKVCTSQYFMWYLVFLPLVLPNSKLLS 758


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 494 VNEHPTHSEKINGNEVTTQIVPN 426
           V  HP+HSE  + +E T ++ P+
Sbjct: 57  VGPHPSHSENASDSETTLEVSPD 79


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +1

Query: 163 FIDISTSLKLQLGYGIGHVLNDVCASLWFTYFL--VYFKLVLEFSNVQSGTLMLVGQMVD 336
           F+  S   KL +  GIG  + D+C++L+ T  +  +  KL    SN Q   L+ +  ++ 
Sbjct: 520 FVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLT---SNEQISLLLKI--IIP 574

Query: 337 ALATPFIGYHSDHTDNFWSAKYGRRKLWHLF 429
           +L T     +  H      AK+   KL  LF
Sbjct: 575 SLTTLACDNNGTHVLQKCIAKFPPEKLEPLF 605


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 FVWYNLCCDLISIYLF*MCWMFIDTQMGSNVL 518
           F+W  L  +L ++ L  M  + +D Q+  N+L
Sbjct: 283 FLWQGLSLELFTVCLVIMAHLHVDVQIPPNIL 314


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +1

Query: 436 ICVVTSFPFIFSECVGCSLTHRWAQMYYFAAFIVIFQIGWAAVQISHLSLIPE 594
           IC++ ++ FI    +  ++    A +     ++++  IG+    ISH    PE
Sbjct: 34  ICMIIAYVFILPAGIVLAMAKSKAHIPVQIVYVILTLIGYIFAHISHHKASPE 86


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 182 LVDISINSLSILCFLVSVLYHYFLVLLA----IVYHYFDYLLCIVLH 54
           LV  + N  SI  F   + Y Y  +LL     I+Y+Y+  L+C+  H
Sbjct: 34  LVSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPH 80


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +1

Query: 427 FGTICVVTSFPFIFSECVGCSLTHRWAQMYYFAAFIVIFQIGWAAVQISHLSLIPELAQD 606
           F  +C++  F             + + Q Y  A  ++ F IG+     SH+  + +L  D
Sbjct: 493 FNILCLMAEFYVSLFPIGSKPNANDFFQGYLAAPIVIAFFIGYKIYDRSHIPSLSKLDLD 552

Query: 607 DHTRTH 624
              RT+
Sbjct: 553 TGLRTY 558


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 334 DALATPFIGYHSDHTDNFWSAKYGRRKLWHLFGTICVVT 450
           DAL+T  + Y SD       A  G+ K+W +    C+VT
Sbjct: 340 DALST--LQYSSDGQRIITGADDGKIKVWDMNSGFCIVT 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,286
Number of Sequences: 5004
Number of extensions: 60388
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)