Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_I10
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    98   5e-21
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    97   1e-20
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    29   3.2  
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285...    29   4.2  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   5.6  
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    28   7.4  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
 Frame = +1

Query: 196 LGYGIGHVLNDVCASLWFTYFLVYFKLVLEFSNVQSGTLMLVGQMVDALATPFIGYHSDH 375
           L YG+GH+LND+ ++ WFTY L++ + +   +   +  +ML GQ+ D L T   G   D 
Sbjct: 23  LSYGVGHMLNDITSACWFTYLLLFLQEI-GLAPRDAAIVMLSGQVADGLMTILAGEMID- 80

Query: 376 TDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSL--THRW-AQMYYFAAFIVIFQ 546
                  ++G  KLWH+ G+I V  SF  +F  C+ C++  T  +  +   ++ F  +F 
Sbjct: 81  -------RFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLVRTIGYSFFAAVFN 133

Query: 547 IGWAAVQISHLSLIPELAQDDHTRTHLTAIRYAFT 651
           IGWAA Q+SH+S++  +  +  +R  L + R AFT
Sbjct: 134 IGWAATQVSHMSMVNCMTLNSTSRVALASCRNAFT 168


>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
 Frame = +1

Query: 196 LGYGIGHVLNDVCASLWFTYFLVYFKLVLEFSNVQSGTLMLVGQMVDALATPFIGYHSDH 375
           L YG GH+LND+ +S WFTY LV F   +  S   +  +ML GQ+ D  AT F+G   D 
Sbjct: 20  LSYGSGHMLNDITSSCWFTYLLV-FLTDIGLSPSDAAVVMLSGQLADGFATIFVGELID- 77

Query: 376 TDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSLT---HRWAQMYYFAAFIVIFQ 546
                  ++G  KLWH  G+I V  SF  +F  C+ C LT       +   ++ F  IF 
Sbjct: 78  -------RFGHFKLWHAGGSILVAISFSSVFGSCLPCKLTGTISSTMETVGYSTFAAIFN 130

Query: 547 IGWAAVQISHLSL 585
           +GWA  QI++LSL
Sbjct: 131 VGWAVTQIANLSL 143


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 525 CFYCHIPNWMGSSAN 569
           CF C +PNWM S  N
Sbjct: 674 CFICKVPNWMSSLGN 688


>04_01_0226 +
           2842897-2842921,2843049-2843155,2843426-2843494,
           2850676-2852745
          Length = 756

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 241 LWFTYFLVYFKLVLEFSNVQSGTLMLVGQMVDALATPFIGYHSDHTDNFWSAKYGRRKLW 420
           LW  Y L     +    N+  G++ +    + A   PF+  H    DN  +      KLW
Sbjct: 88  LWIAYQLADSTAIYALGNLSFGSVAIEEHRLAAFWAPFLLLHLGGPDNITAYALEDNKLW 147


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 256 FLVYFKLVLEFSNVQSGTLMLVGQMVDALATPFIGYHSDHTDNFWSAKYGR 408
           F+VY    ++F NV S     +G+ V  L  P I Y SD     W+  Y R
Sbjct: 848 FMVYQCCPVKFINVWS-----LGETVFNLFKPTISYRSDINIELWNLSYSR 893


>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 480 WMFIDTQMGSNVLF-CCFYCHIPNWMGS 560
           W+   T + S VLF C FY  IP+W+G+
Sbjct: 391 WIRNCTSLESLVLFNCSFYGPIPSWIGN 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,333
Number of Sequences: 37544
Number of extensions: 335062
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)