Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_H15
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   2.4  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   4.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   5.6  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.4  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   9.7  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   9.7  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 371 LCMKQYSHKRNTDFLFIQFRIRDSVHEITISTKSLHILHSIH--INLQSFKLTFLII 207
           + +K Y H+  T  L   F    SV  + +S  SL +LH++   + +Q+ K   ++I
Sbjct: 248 VAVKHYVHEYPTLDLIYIFSALMSVFCLLLSVASLELLHTVQEVVGMQAIKFFIVLI 304


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 442 NLTPRTAIKIHVPRPKFFHSNMASCV*NSTLTNETLISYLYSSELETQ 299
           NL   TAI   +   +   SNMAS +  S  + E + SY  + + ETQ
Sbjct: 530 NLGNLTAISETLENGQTLKSNMASSIEKSKTSTEVVASYDTTLDEETQ 577


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 592 IFRHKTCNPLDFVSAFNATIIRKKSTKAPKKLFWFYAGH 476
           I+R +  NP++    F  ++   KS+K P KLFW    H
Sbjct: 440 IWRSRLTNPVN-KWYFERSVGSLKSSKTPWKLFWTGDSH 477


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 190  NHSNYAIIKNVNLKDCKFMWIECNICNDFVEIVISWTESLILNCINKKSVFRL*E--YCF 363
            +H+N +++   +L   KFM +  N C + + ++I+  E      I    V  L +   CF
Sbjct: 933  SHNNQSLLLAASLTLSKFMCLSNNFCMEHLPLLITILEKCDNPIIRNNLVIGLADLTVCF 992

Query: 364  IH 369
             H
Sbjct: 993  NH 994


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 365 MKQYSHKRNTDFLFIQFRIRDSVHEITIS 279
           +K +S  RN   +   FR+ D VHE  IS
Sbjct: 59  VKVFSFPRNETTIAQLFRVLDCVHEAVIS 87


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -1

Query: 426 QQSKFMCHALNFSILIWRL-VYETVLS--QTKH*FLIYTVQN*RLSPRNYYFNKIIT 265
           +Q+++ C+ +N+ I   RL V + +L   + +H F  +TV +   SP NY F + +T
Sbjct: 257 KQAEYYCY-MNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVT 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,943
Number of Sequences: 5004
Number of extensions: 45363
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)