Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_H09
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 151 6e-38
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 116 3e-27
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 111 1e-25
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.19
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 30 0.25
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 1.8
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 26 5.4
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 151 bits (367), Expect = 6e-38
Identities = 72/92 (78%), Positives = 84/92 (91%)
Frame = +3
Query: 144 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 323
FP GR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPRHL
Sbjct: 66 FPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHL 125
Query: 324 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 419
QLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 126 QLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 116 bits (279), Expect = 3e-27
Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +3
Query: 141 SFPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 320
+FP GR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI PRH
Sbjct: 26 AFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRH 84
Query: 321 LQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 446
LQLAIR DEEL+ L+ TIA GGV+P+I+ L+ K+ G G P
Sbjct: 85 LQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 111 bits (266), Expect = 1e-25
Identities = 58/99 (58%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 SFPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 320
+FP GR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI PRH
Sbjct: 26 AFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRH 84
Query: 321 LQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 434
LQLAIR DEEL+ L+ TIA GGV+P+I+ L+ K G
Sbjct: 85 LQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +3
Query: 144 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 323
FP RI + + G+V V + LE +++ + ++ + KR+T HL
Sbjct: 24 FPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHL 82
Query: 324 QLAIRGDEELDSL 362
+ A++ E+ D L
Sbjct: 83 KHAVQSVEQFDFL 95
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 230 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 334
+Y G +YS G V GKCV +F + + +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 343 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 167
SPL CKC G IR+ + L + +SK + K E T + + P + + C
Sbjct: 19 SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 282 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 386
+K+L + K +TP ++ + + DE +DSLI+ + G
Sbjct: 69 NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -3
Query: 221 NCCRSSYAPVACCPILKMPMN----SSXRETEVLL*LILRQLSPWLYQNLYPLYHRP 63
NCCR + P+L +P+N S E+ L +LRQ ++ NL P P
Sbjct: 115 NCCREIARRRSLSPLLILPLNFINAFSWGMIEIPLLFLLRQELCAIHYNLDPTQLSP 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,860
Number of Sequences: 5004
Number of extensions: 49909
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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