Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_H07
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L44140-7|AAA92650.1| 157|Homo sapiens protein ( , complete cds'... 57 6e-08
J03589-1|AAA36790.1| 157|Homo sapiens protein ( Human ubiquitin... 57 6e-08
BX664739-2|CAI43235.1| 157|Homo sapiens ubiquitin-like 4 protein. 57 6e-08
BX664739-1|CAI43234.1| 180|Homo sapiens ubiquitin-like 4 protein. 57 6e-08
BC053589-1|AAH53589.1| 157|Homo sapiens ubiquitin-like 4A protein. 57 6e-08
BC043346-1|AAH43346.1| 157|Homo sapiens ubiquitin-like 4A protein. 57 6e-08
D23662-1|BAA04889.1| 81|Homo sapiens ubiquitin-like protein pr... 39 0.013
BC104664-1|AAI04665.1| 81|Homo sapiens neural precursor cell e... 39 0.013
BC104201-1|AAI04202.1| 81|Homo sapiens neural precursor cell e... 39 0.013
BC104200-1|AAI04201.1| 81|Homo sapiens neural precursor cell e... 39 0.013
CR407662-1|CAG28590.1| 81|Homo sapiens NEDD8 protein. 39 0.018
BC058929-1|AAH58929.1| 174|Homo sapiens ubiquitin-like 4B protein. 39 0.018
AK098556-1|BAC05331.1| 174|Homo sapiens protein ( Homo sapiens ... 39 0.018
M13755-1|AAA36038.1| 165|Homo sapiens protein ( Human interfero... 34 0.51
BT007297-1|AAP35961.1| 165|Homo sapiens interferon, alpha-induc... 34 0.51
BC009507-1|AAH09507.1| 165|Homo sapiens ISG15 ubiquitin-like mo... 34 0.51
AY168648-1|AAN86983.1| 165|Homo sapiens ubiquitin-like protein ... 34 0.51
AL645608-12|CAI15574.1| 165|Homo sapiens ISG15 ubiquitin-like m... 34 0.51
M21786-1|AAA36128.1| 165|Homo sapiens protein ( Human interfero... 32 2.0
BC063841-1|AAH63841.1| 601|Homo sapiens ubiquilin 4 protein. 31 3.6
BC018403-1|AAH18403.1| 601|Homo sapiens ubiquilin 4 protein. 31 3.6
AL355388-14|CAH72633.1| 601|Homo sapiens ubiquilin 4 protein. 31 3.6
AL355388-13|CAH72634.1| 226|Homo sapiens ubiquilin 4 protein. 31 3.6
AK023354-1|BAB14539.1| 314|Homo sapiens protein ( Homo sapiens ... 31 3.6
AF188240-1|AAF80171.1| 601|Homo sapiens A1U protein. 31 3.6
AB209566-1|BAD92803.1| 600|Homo sapiens ataxin-1 ubiquitin-like... 31 3.6
BC025323-1|AAH25323.1| 706|Homo sapiens transmembrane channel-l... 30 8.2
AY263166-1|AAP78781.1| 706|Homo sapiens TMC4 protein protein. 30 8.2
AY236492-1|AAP69870.1| 712|Homo sapiens transmembrane channel-l... 30 8.2
>L44140-7|AAA92650.1| 157|Homo sapiens protein ( , complete cds's.
).).
Length = 157
Score = 56.8 bits (131), Expect = 6e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M++TVK LQG EC + + L+S LK+ V+ KL++PV QQ+ D + Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
+I +KLNLVVK E +
Sbjct: 60 SIGPNSKLNLVVKPLEKV 77
>J03589-1|AAA36790.1| 157|Homo sapiens protein ( Human
ubiquitin-like protein (GdX) gene, complete cds. ).
Length = 157
Score = 56.8 bits (131), Expect = 6e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M++TVK LQG EC + + L+S LK+ V+ KL++PV QQ+ D + Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
+I +KLNLVVK E +
Sbjct: 60 SIGPNSKLNLVVKPLEKV 77
>BX664739-2|CAI43235.1| 157|Homo sapiens ubiquitin-like 4 protein.
Length = 157
Score = 56.8 bits (131), Expect = 6e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M++TVK LQG EC + + L+S LK+ V+ KL++PV QQ+ D + Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
+I +KLNLVVK E +
Sbjct: 60 SIGPNSKLNLVVKPLEKV 77
>BX664739-1|CAI43234.1| 180|Homo sapiens ubiquitin-like 4 protein.
Length = 180
Score = 56.8 bits (131), Expect = 6e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M++TVK LQG EC + + L+S LK+ V+ KL++PV QQ+ D + Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
+I +KLNLVVK E +
Sbjct: 60 SIGPNSKLNLVVKPLEKV 77
>BC053589-1|AAH53589.1| 157|Homo sapiens ubiquitin-like 4A protein.
Length = 157
Score = 56.8 bits (131), Expect = 6e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M++TVK LQG EC + + L+S LK+ V+ KL++PV QQ+ D + Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
+I +KLNLVVK E +
Sbjct: 60 SIGPNSKLNLVVKPLEKV 77
>BC043346-1|AAH43346.1| 157|Homo sapiens ubiquitin-like 4A protein.
Length = 157
Score = 56.8 bits (131), Expect = 6e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M++TVK LQG EC + + L+S LK+ V+ KL++PV QQ+ D + Y
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
+I +KLNLVVK E +
Sbjct: 60 SIGPNSKLNLVVKPLEKV 77
>D23662-1|BAA04889.1| 81|Homo sapiens ubiquitin-like protein
protein.
Length = 81
Score = 39.1 bits (87), Expect = 0.013
Identities = 26/72 (36%), Positives = 35/72 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M I VK L G E IDI P+ + +K V K IP +QQ+ D+ T Y
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 480 NIKEGTKLNLVV 515
I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
>BC104664-1|AAI04665.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 39.1 bits (87), Expect = 0.013
Identities = 26/72 (36%), Positives = 35/72 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M I VK L G E IDI P+ + +K V K IP +QQ+ D+ T Y
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 480 NIKEGTKLNLVV 515
I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
>BC104201-1|AAI04202.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 39.1 bits (87), Expect = 0.013
Identities = 26/72 (36%), Positives = 35/72 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M I VK L G E IDI P+ + +K V K IP +QQ+ D+ T Y
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 480 NIKEGTKLNLVV 515
I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
>BC104200-1|AAI04201.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 39.1 bits (87), Expect = 0.013
Identities = 26/72 (36%), Positives = 35/72 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M I VK L G E IDI P+ + +K V K IP +QQ+ D+ T Y
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 480 NIKEGTKLNLVV 515
I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
>CR407662-1|CAG28590.1| 81|Homo sapiens NEDD8 protein.
Length = 81
Score = 38.7 bits (86), Expect = 0.018
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M I VK L G E +DI P+ + +K V K IP +QQ+ D+ T Y
Sbjct: 1 MLIKVKTLTGKEIEVDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 480 NIKEGTKLNLVV 515
I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
>BC058929-1|AAH58929.1| 174|Homo sapiens ubiquitin-like 4B protein.
Length = 174
Score = 38.7 bits (86), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M +TVK L G C + + ++ LKR V+R+L +P EQQ DD + Y
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
I +N++++ E +
Sbjct: 60 CIGPNASINVIMQPLEKM 77
>AK098556-1|BAC05331.1| 174|Homo sapiens protein ( Homo sapiens
cDNA FLJ25690 fis, clone TST04424. ).
Length = 174
Score = 38.7 bits (86), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
M +TVK L G C + + ++ LKR V+R+L +P EQQ DD + Y
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDY- 59
Query: 480 NIKEGTKLNLVVKKPESL 533
I +N++++ E +
Sbjct: 60 CIGPNASINVIMQPLEKM 77
>M13755-1|AAA36038.1| 165|Homo sapiens protein ( Human
interferon-induced 17-kDa/15-kDa protein mRNA, complete
cds. ).
Length = 165
Score = 33.9 bits (74), Expect = 0.51
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 306 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 425
+TVK L G E + + SM +SELK + +K+ + QQ+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQR 44
>BT007297-1|AAP35961.1| 165|Homo sapiens interferon,
alpha-inducible protein (clone IFI-15K) protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.51
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 306 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 425
+TVK L G E + + SM +SELK + +K+ + QQ+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQR 44
>BC009507-1|AAH09507.1| 165|Homo sapiens ISG15 ubiquitin-like
modifier protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.51
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 306 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 425
+TVK L G E + + SM +SELK + +K+ + QQ+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQR 44
>AY168648-1|AAN86983.1| 165|Homo sapiens ubiquitin-like protein
ISG15 protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.51
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 306 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 425
+TVK L G E + + SM +SELK + +K+ + QQ+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQR 44
>AL645608-12|CAI15574.1| 165|Homo sapiens ISG15 ubiquitin-like
modifier protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.51
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 306 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 425
+TVK L G E + + SM +SELK + +K+ + QQ+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQR 44
>M21786-1|AAA36128.1| 165|Homo sapiens protein ( Human
interferon-induced 15-Kd protein (ISG) gene, exon 2. ).
Length = 165
Score = 31.9 bits (69), Expect = 2.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 306 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 425
+TVK L G E + + SM +SELK + + + + QQ+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQNIGVHAFQQR 44
>BC063841-1|AAH63841.1| 601|Homo sapiens ubiquilin 4 protein.
Length = 601
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 13 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 70
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 71 GIKDGLTVHLVIKTPQKAQD 90
>BC018403-1|AAH18403.1| 601|Homo sapiens ubiquilin 4 protein.
Length = 601
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 13 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 70
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 71 GIKDGLTVHLVIKTPQKAQD 90
>AL355388-14|CAH72633.1| 601|Homo sapiens ubiquilin 4 protein.
Length = 601
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 13 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 70
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 71 GIKDGLTVHLVIKTPQKAQD 90
>AL355388-13|CAH72634.1| 226|Homo sapiens ubiquilin 4 protein.
Length = 226
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 13 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 70
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 71 GIKDGLTVHLVIKTPQKAQD 90
>AK023354-1|BAB14539.1| 314|Homo sapiens protein ( Homo sapiens
cDNA FLJ13292 fis, clone OVARC1001180, weakly similar to
UBIQUITIN-LIKE PROTEIN DSK2. ).
Length = 314
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 13 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 70
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 71 GIKDGLTVHLVIKTPQKAQD 90
>AF188240-1|AAF80171.1| 601|Homo sapiens A1U protein.
Length = 601
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 13 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 70
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 71 GIKDGLTVHLVIKTPQKAQD 90
>AB209566-1|BAD92803.1| 600|Homo sapiens ataxin-1 ubiquitin-like
interacting protein variant protein.
Length = 600
Score = 31.1 bits (67), Expect = 3.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 300 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 479
+++TVK + E ++ I + E K ++R+ +Q D T+ +
Sbjct: 12 IRVTVKTPKDKEEIV-ICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQH- 69
Query: 480 NIKEGTKLNLVVKKPESLYD 539
IK+G ++LV+K P+ D
Sbjct: 70 GIKDGLTVHLVIKTPQKAQD 89
>BC025323-1|AAH25323.1| 706|Homo sapiens transmembrane channel-like
4 protein.
Length = 706
Score = 29.9 bits (64), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 CWILYTQKSINSI-QDLRRPGVVIDPYSLRLFSVIYFGLTSDIH 133
C +L +S++ + Q L + YS R+FS FGL D+H
Sbjct: 259 CLLLILHRSVSGLKQTLLAESEALTSYSHRVFSAWDFGLCGDVH 302
>AY263166-1|AAP78781.1| 706|Homo sapiens TMC4 protein protein.
Length = 706
Score = 29.9 bits (64), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 CWILYTQKSINSI-QDLRRPGVVIDPYSLRLFSVIYFGLTSDIH 133
C +L +S++ + Q L + YS R+FS FGL D+H
Sbjct: 259 CLLLILHRSVSGLKQTLLAESEALTSYSHRVFSAWDFGLCGDVH 302
>AY236492-1|AAP69870.1| 712|Homo sapiens transmembrane channel-like
protein 4 protein.
Length = 712
Score = 29.9 bits (64), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 CWILYTQKSINSI-QDLRRPGVVIDPYSLRLFSVIYFGLTSDIH 133
C +L +S++ + Q L + YS R+FS FGL D+H
Sbjct: 265 CLLLILHRSVSGLKQTLLAESEALTSYSHRVFSAWDFGLCGDVH 308
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,543,133
Number of Sequences: 237096
Number of extensions: 1486651
Number of successful extensions: 3557
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3557
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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