Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_H03
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    26   6.1  
Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 156 VIVHKHRTINIILYI*MLCL 215
           +IVH HR I ++L I +LCL
Sbjct: 59  IIVHFHRLICVMLVILLLCL 78


>Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical
           protein D2089.5 protein.
          Length = 421

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 98  LQFDVRFNARKLW 60
           L+FDV  NARKLW
Sbjct: 69  LEFDVEQNARKLW 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,473,054
Number of Sequences: 27780
Number of extensions: 55879
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)