Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_H01
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    25   0.42 
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    25   0.42 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.1  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 67  LHLVLRLRGGMQIFVK 82



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 143 LHLVLRLRGGMQIFVK 158



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 219 LHLVLRLRGGMQIFVK 234



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 295 LHLVLRLRGGMQIFVK 310



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 371 LHLVLRLRGGMQIFVK 386



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 447 LHLVLRLRGGMQIFVK 462



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 523 LHLVLRLRGGMQIFVK 538



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48  LHLVLSVRGGGQLFNK 95
           LHLVL +RGG Q+F K
Sbjct: 599 LHLVLRLRGGMQIFVK 614


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
          protein.
          Length = 112

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 48 LHLVLSVRGGGQLFNK 95
          LHLVL +RGG Q+F K
Sbjct: 39 LHLVLRLRGGMQIFVK 54


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 317 LTTRNPS*TSTLPLKRPW 264
           LT  +PS  S  P+ +PW
Sbjct: 572 LTNWHPSDKSAKPMLKPW 589


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 560 LAPQTVLPHLQRLFMITLKXVEGLMTTVHATTAT 661
           +AP  + PHL R    T   +     T+   + T
Sbjct: 239 MAPSVMYPHLNRSSPTTATAIASATVTIQNVSNT 272


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 560 LAPQTVLPHLQRLFMITLKXVEGLMTTVHATTAT 661
           +AP  + PHL R    T   +     T+   + T
Sbjct: 187 MAPSVMYPHLNRSSPTTATAIASATVTIQNVSNT 220


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 560 LAPQTVLPHLQRLFMITLKXVEGLMTTVHATTAT 661
           +AP  + PHL R    T   +     T+   + T
Sbjct: 370 MAPSVMYPHLNRSSPTTATAIASATVTIQNVSNT 403


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,630
Number of Sequences: 336
Number of extensions: 3216
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)