Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_G22
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 42 6e-04
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 36 0.028
06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210 31 0.60
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 29 3.2
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 29 3.2
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103... 28 5.6
09_01_0150 - 2244757-2245303,2252925-2253277 28 7.4
05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519 27 9.8
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162... 27 9.8
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 491 PRKLINSFXVTSEVMTKNKTKIWIFPEGTRNKNFTKFLPFKKGAFNIAVSAQVP 652
P I S + +TKN + +FPE TR+K + LPFKKG + A+ ++P
Sbjct: 110 PAAAIESMKEVARAVTKNNLSLILFPEDTRSKT-GRLLPFKKGFVHTALQTRLP 162
Score = 29.5 bits (63), Expect = 2.4
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Frame = +1
Query: 253 HVTKIMNLKWELRN-----GEILAEERGAVVVSNHQYTLDVLGMFNIWDVADRISAIAKK 417
HVT M L W L N G RG + + NH LD+ + +W IAKK
Sbjct: 30 HVTGRM-LMWILGNPIKLEGMENLNTRG-IFICNHASPLDIFLV--MWLAPTGTVGIAKK 85
Query: 418 ELFYVWPFGLSAYLAGVVFIDRYDPKEAYKQLQXHFRSYDK 540
E+ + FG LA + I R +P A + ++ R+ K
Sbjct: 86 EIIWYPLFGQLYVLANHLRIHRSNPAAAIESMKEVARAVTK 126
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 533 MTKNKTKIWIFPEGTRNKNFTKFLPFKKGAFNIAVSAQVP 652
+ K ++ FPEGTR+K+ K FK+GAF++A P
Sbjct: 244 LVKKGASVFFFPEGTRSKD-GKLGAFKRGAFSVATKTGAP 282
Score = 35.1 bits (77), Expect = 0.049
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +1
Query: 178 LVMWPL-FLFSPKNVRNTKWAAKILKHVTKIMNLKWELRNGEILAEERG-AVVVSNHQYT 351
+V+ PL LF R + AKI +T M K ++ E L AV V+NHQ
Sbjct: 128 VVVHPLVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSF 187
Query: 352 LDVLGMFNIWDVADRISAIAKKELFYVWPFGLSAYLAGVVFIDRYDPK 495
LD+ + + + I+K +F G + YL GV+ + R D +
Sbjct: 188 LDI---YTLLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSR 232
>06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210
Length = 426
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 HFMSLXCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNLKWE--LRNGEILAEERG 321
H SL C+LA V P ++ K ++ KW L ++T ++L W L EI ++ G
Sbjct: 158 HVQSLLCLLAKVEEPTQVYHDKTFKSRKWHF-ALHNIT--VSLIWAPFLVEAEIFEDDDG 214
Query: 322 AVVVSNHQYTLDVL 363
V S Q LD+L
Sbjct: 215 -VSTSELQLHLDIL 227
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 214 NVRNTKWAAKILKHVTKIMNLKWELRNGEILAEERGAVVVSNHQYTLDVLGMFNIWDVAD 393
N+RN A L V ++ ++ N ++ + VVV+ H+ T+ + V D
Sbjct: 275 NIRNKGQATLFLDQVPNLLKVENVQNNNQLQSSLAENVVVAIHEDTMAEMVRLEAIKVVD 334
Query: 394 RISA 405
RISA
Sbjct: 335 RISA 338
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 321 CSCRFKSSVHIGCFRNVQ 374
CS R K++VHIGC+RN++
Sbjct: 1099 CS-RCKAAVHIGCYRNIE 1115
>08_02_0243 -
14708055-14708416,14708487-14709324,14709482-14710323,
14710466-14710520,14711535-14711549,14713030-14713033,
14713340-14713424,14714045-14714084
Length = 746
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 435 PNVKQFFFGYR*NSISHIPYIEHS*NIQCVLMI*NDNC 322
PNV++ G N++ IP I+ N++C+L+ +D C
Sbjct: 502 PNVRRLAVG---NAVEEIPGIQDQKNLRCLLVYHHDAC 536
>09_01_0150 - 2244757-2245303,2252925-2253277
Length = 299
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 600 NFVKFLFLVPSGNIQIFV-LFFVITSEVTLKLFISFLGI 487
NF+K FL+PS N +FV +F ++ + ++ L ++ L +
Sbjct: 13 NFLKEGFLLPSRNRSLFVAVFLLVVASTSVLLLVNDLAV 51
>05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519
Length = 436
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 157 SLXCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNLKWE--LRNGEILAEERGAVV 330
SL C+L+ P+ ++ K RN +W + ++L W L E+ E G
Sbjct: 46 SLLCLLSKAEEPIEVYHDKEYRNRRWH---FQSYNFTVSLVWSPFLTKSEVFENENGQ-S 101
Query: 331 VSNHQYTLDVL 363
S Q LD+L
Sbjct: 102 TSEIQLHLDIL 112
>03_01_0205 +
1621760-1621784,1622079-1622208,1622569-1622635,
1622806-1622909,1623099-1623147,1623190-1623290,
1623623-1623740,1624342-1624455
Length = 235
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 312 GTRCSCRFKSSVHIGCFRNVQYM 380
GT+C C F SS + G +V YM
Sbjct: 148 GTKCECHFWSSNYCGSTDSVDYM 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,290,363
Number of Sequences: 37544
Number of extensions: 327891
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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