Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_G21
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 30 1.8
09_04_0392 + 17251536-17252336 29 2.3
05_03_0529 + 15048063-15048105,15048146-15048246,15051715-150522... 29 2.3
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 2.3
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 29 2.3
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 29 3.1
03_06_0163 - 32105234-32105977 29 4.1
06_01_0082 + 656362-657798 28 5.4
08_01_0637 + 5537421-5539547 28 7.1
04_01_0288 + 3824337-3826385 28 7.1
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693 28 7.1
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 27 9.4
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -3
Query: 626 RCSCNERTQPLLRPARHTV---RHHTRLRPAAHYKRDQDSR 513
R +C + L P V RHHTRL P H+ RDQ R
Sbjct: 718 RKACASIEEGYLPPVTFVVVQKRHHTRLFPEDHHARDQMDR 758
>09_04_0392 + 17251536-17252336
Length = 266
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 368 CGTECVRCGADGCVKC 415
CG C CG DGC+ C
Sbjct: 61 CGEACALCGIDGCLGC 76
>05_03_0529 +
15048063-15048105,15048146-15048246,15051715-15052258,
15052303-15052570,15053510-15053681,15053783-15054059,
15054243-15054310,15054358-15054489,15055129-15055227
Length = 567
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 459 VPLEPGSLGRTMTTSWAESAILVTLIMSCWSEARVVPYCVSRWSQQRLR 605
+PL G M S I ++S AR+ P C SR+ QQ+L+
Sbjct: 454 MPLPRGIQHNAMVHQGLSSLIAAETLLSIHMHARLFPMCGSRFIQQKLQ 502
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -3
Query: 626 RCSCNERTQPLLRPARHTV---RHHTRLRPAAHYKRDQDSRFG 507
R +C + L P V RHHTRL P H +RD + G
Sbjct: 867 RKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSG 909
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -3
Query: 626 RCSCNERTQPLLRPARHTV---RHHTRLRPAAHYKRDQDSRFG 507
R +C + L P V RHHTRL P H +RD + G
Sbjct: 638 RKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSG 680
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 463 GTLVCACAARPDQESKALHAPVRTATHALCAASCV 359
G L AC +RP S ALH PV T T+ A + V
Sbjct: 28 GLLRAACFSRPTASSPALH-PVTTVTNRASARAAV 61
>03_06_0163 - 32105234-32105977
Length = 247
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 362 TRCGTECVRCGADGCVKCLRLLVWPGGTCTHECPSGTRESWA-HDDHL 502
TRC C G C+ LLV P T C G E W HDD +
Sbjct: 85 TRCS--CQLSGKPSLPGCIVLLVEPVATNIWYCRIGDDEEWTRHDDDI 130
>06_01_0082 + 656362-657798
Length = 478
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -1
Query: 565 TTRASDQQLIISVTRIADSAHEVVIVRPRLPGSRGTLVCACAARPDQESKALHAPVRTA- 389
+TRAS +SV DS+H ++ P P S+ + + A R + K+L +R+A
Sbjct: 52 STRASLLLTAVSVLAADDSSHRATLLLPDSPHSQASPLSPSALR--RHYKSLSESLRSAP 109
Query: 388 -THALCAASCVVELWRR 341
+ + +S V E RR
Sbjct: 110 PSSSPAVSSAVKEALRR 126
>08_01_0637 + 5537421-5539547
Length = 708
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 165 HTVKIIASLIRRIQWCR--WSVTILAQHNIL 79
HT+ + L+R QW R WS + + QHN+L
Sbjct: 353 HTITSLRRLVRAAQWRRRYWSCS-MGQHNLL 382
>04_01_0288 + 3824337-3826385
Length = 682
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 465 LEPGSLGRTMTTSWAESAILVTLIMSCWSEARVVPYCVSRWSQQRLRTL 611
LE SL R++ ++W LV L + WS R V C RW + R L
Sbjct: 319 LETRSLLRSLWSTWG----LVFLCDTRWSWLRHVALCSGRWHRLRYTVL 363
>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
Length = 661
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 413 CLRLLVWPGGTCTHECPSGTRESWAHDDHLMG 508
C+ LLV P GT C G E W D+ +G
Sbjct: 446 CVVLLVEPVGTIIWYCHIGDDEKWVEHDYDIG 477
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 569 RHHTRLRPAAHYKRDQDSRFG 507
RHHTRL P H ++D R G
Sbjct: 785 RHHTRLFPEVHGRQDLTDRSG 805
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,053
Number of Sequences: 37544
Number of extensions: 331855
Number of successful extensions: 989
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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