Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_G19
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    46   2e-06
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   2.2  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.2  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.6  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 21/67 (31%), Positives = 41/67 (61%)
 Frame = +1

Query: 310 YSIPGILHFIQHEWARFELERSQWEVDKAEFEARIAFLQGXRXGQENLKNDLVRRIXMLE 489
           Y++ G++ ++Q+E  + E + + WE+++AE + R+A L+  R   E   +   RR  MLE
Sbjct: 22  YTLQGVIQYLQYEAFKNERDHNLWEIERAELKIRVAQLERERAKLEQSLSFQQRRAEMLE 81

Query: 490 YALKQER 510
            +L++ R
Sbjct: 82  KSLRELR 88


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 300 LTGFFILFIIYTDSNLRSHLPSVVMRYGVIIHG 202
           +TGF+I  IIY    +  H P  + +   + HG
Sbjct: 192 ITGFYIFAIIYAAGGIPHHKPPNLFKEMPLAHG 224


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 276 IIYTDSNLRSHLPSVVMRYGVIIHGCRDFHDMATITELNLSH 151
           ++Y+ S L   L S+    G++I G  + +D A ITE  + H
Sbjct: 261 MVYSSSKL-GLLDSIKAELGIVIDGKIESNDAADITEKEILH 301


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 425 WRKAIRASNSALSTSHCDLSSSNLAHSCWIKCK 327
           W    R   S +S S    S + LA  C++KC+
Sbjct: 308 WDYKTRIQESCISVSSLFTSKTLLASFCFVKCQ 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,746
Number of Sequences: 5004
Number of extensions: 40556
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)