Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_G09
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 38 6e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 33 0.021
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 30 0.15
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 30 0.20
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 27 1.0
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 4.2
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 4.2
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 25 4.2
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 5.6
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 5.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.3
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 38.3 bits (85), Expect = 6e-04
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS++T+ GF+GE P+C++ S
Sbjct: 10 EVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 33.1 bits (72), Expect = 0.021
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 140 IQEKQAVVLDLGSEYTKFGFTGEAAPRCIIRSQF 241
++E ++V+D GS +T+FG+ GE +P I+ S +
Sbjct: 7 LEEIPSLVIDPGSCWTRFGYAGEESPMTILPSYY 40
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 30.3 bits (65), Expect = 0.15
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 143 QEKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
+E A+V+D GS K GF G+ APR + S
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPS 33
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.20
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 140 IQEKQAVVLDLGSEYTKFGFTGEAAPRCI 226
I + Q + +D GS + K GF G+ P+C+
Sbjct: 6 IFDNQPICIDNGSGFIKAGFAGDDIPKCL 34
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 310 PSXYVTCYCILGMS 351
P Y TCYC+LG+S
Sbjct: 312 PDQYHTCYCLLGLS 325
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 336 YFRHVLVNPKERKVVVLESLPHSYSVQRKH*P 431
+F H+L E+ + LE H+Y+ Q+ H P
Sbjct: 408 HFEHLLRPYMEKYHMTLEEFTHAYNYQQIHEP 439
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 306 SYSSSGVEYSXTFLNLLSVEHQNCDLIIHRGAASPVKPNLVYS 178
SY SSG + N L D ++ + SP+ PN VYS
Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYS 371
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 266 KKVYEYSTPEELYDNLVNMXHVIV---F*ACPGESKG 367
KK+Y+ +TPE + NLV ++ F AC ++ G
Sbjct: 127 KKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGG 163
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 232 SYNT-SWSCFTSKTKLGIF 179
SY+T SWSCF T L IF
Sbjct: 31 SYSTGSWSCFDKGTLLEIF 49
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 441 NSTLASVSAEQSRSEAGTPVQPLYVPLDSPGH 346
N LA ++AE++ S TPV V D P H
Sbjct: 91 NGKLADLNAEEAYSHLTTPVFGKDVVYDIPNH 122
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 152 QAVVLDLGSEYTKFGFTGEAA---PRCIIRSQ 238
+ +VLD G+ + K GF G P C+ RS+
Sbjct: 6 KTIVLDNGAYHIKAGFAGGKVVEIPNCLTRSK 37
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/26 (26%), Positives = 15/26 (57%)
Frame = +1
Query: 187 QVWFYW*SSSTMYYKITILVLDRKKI 264
++W YW + Y+ + ++ RKK+
Sbjct: 51 RIWDYWNEHRSEYFAFWVELISRKKV 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,010
Number of Sequences: 5004
Number of extensions: 35362
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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