Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_G09
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 30 0.93
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 30 0.93
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.2
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 29 1.2
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 29 1.2
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 29 1.2
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 29 1.2
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 29 1.2
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 29 1.2
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 29 1.2
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.1
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 29 2.1
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 29 2.1
AL110500-15|CAD92406.1| 209|Caenorhabditis elegans Hypothetical... 27 5.0
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 27 8.7
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 143 QEKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
+E A+V+D GS K GF G+ APR + S
Sbjct: 3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPS 33
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 155 AVVLDLGSEYTKFGFTGEAAPRCIIRS 235
A V+D G+ YTK G+ G P+ II S
Sbjct: 8 ACVIDNGTGYTKLGYAGNTEPQFIIPS 34
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 155 AVVLDLGSEYTKFGFTGEAAPRCIIRS 235
A++LD GS K GF G+ APR + S
Sbjct: 8 ALILDNGSGMCKAGFAGDDAPRAVFPS 34
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 146 EKQAVVLDLGSEYTKFGFTGEAAPRCIIRS 235
E A+V+D GS K GF G+ APR + S
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 155 AVVLDLGSEYTKFGFTGEAAPRCIIRS 235
A+V+D GS K GF G+ APR + S
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 155 AVVLDLGSEYTKFGFTGEAAPRCIIRS 235
A+V+D GS K GF G+ APR + S
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 155 AVVLDLGSEYTKFGFTGEAAPRCIIRS 235
A+V+D GS K GF G+ APR + S
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPS 34
>AL110500-15|CAD92406.1| 209|Caenorhabditis elegans Hypothetical
protein Y87G2A.15 protein.
Length = 209
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 173 GSEYTKFGFTGEAAPRCIIRSQFWCSTERRFKKVYEYSTP 292
G+++ TG+ A + S F C ER + + Y+TP
Sbjct: 159 GTDFEAIAGTGDFASKIHFYSDFVCKMEREGRTMLVYATP 198
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 152 QAVVLDLGSEYTKFGFTGEAAPR 220
Q VV+D GS K GF GE P+
Sbjct: 9 QPVVIDNGSGVIKAGFAGEQQPK 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,709
Number of Sequences: 27780
Number of extensions: 189019
Number of successful extensions: 455
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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