Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_G09
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.52 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   4.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 36  KSIDIN*K-RKVNVLSLNCKKGCLNKIWLY 122
           ++ DI  K +KVNV    C KG L K  LY
Sbjct: 593 QNFDIKDKNKKVNVAGCRCVKGILLKSGLY 622


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 420 SAEQSRSEAGTPVQPLYVPLDSPGH 346
           S +Q   +AG P  P  +    PGH
Sbjct: 40  SVQQQSQQAGDPCDPSLLRQGVPGH 64


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 218 RCIIRSQFWCSTERRFKKVYEY 283
           RC+I  + +CS       +Y Y
Sbjct: 37  RCVICERVYCSRNSLMTHIYTY 58


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 327 MLLYFRHVLVNPKER-KVVVLESLPHSY 407
           +L YF  +  NPKE+ ++ +L S P  Y
Sbjct: 832 LLRYFASIATNPKEQAQLNLLASDPAVY 859


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 370 VKWLYWSPCL 399
           V +LYW PC+
Sbjct: 334 VVFLYWLPCI 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,274
Number of Sequences: 438
Number of extensions: 2585
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)