Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_G05
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81713-1|CAA57357.1|  109|Homo sapiens smallest subunit of TFIIA...   170   4e-42
U21242-1|AAB58247.1|  109|Homo sapiens transcription factor TFII...   170   4e-42
U14193-1|AAA64951.1|  109|Homo sapiens transcription factor IIA ...   170   4e-42
CR542192-1|CAG46989.1|  109|Homo sapiens GTF2A2 protein.              170   4e-42
BT007362-1|AAP36026.1|  109|Homo sapiens general transcription f...   170   4e-42
BC001919-1|AAH01919.1|  109|Homo sapiens general transcription f...   170   4e-42
BC000287-1|AAH00287.1|  109|Homo sapiens general transcription f...   170   4e-42
BC014539-1|AAH14539.1|  468|Homo sapiens secretogranin III protein.    29   9.1  
BC009511-1|AAH09511.2|  233|Homo sapiens SCG3 protein protein.         29   9.1  
AY359093-1|AAQ89451.1|  468|Homo sapiens secretogranin protein.        29   9.1  
AF453583-1|AAL67431.1|  468|Homo sapiens secretogranin III protein.    29   9.1  

>X81713-1|CAA57357.1|  109|Homo sapiens smallest subunit of TFIIA
           protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>U21242-1|AAB58247.1|  109|Homo sapiens transcription factor TFIIA
           small subunit p12 protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>U14193-1|AAA64951.1|  109|Homo sapiens transcription factor IIA
           small 12 kDa subunit protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>CR542192-1|CAG46989.1|  109|Homo sapiens GTF2A2 protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>BT007362-1|AAP36026.1|  109|Homo sapiens general transcription
           factor IIA, 2, 12kDa protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>BC001919-1|AAH01919.1|  109|Homo sapiens general transcription
           factor IIA, 2, 12kDa protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>BC000287-1|AAH00287.1|  109|Homo sapiens general transcription
           factor IIA, 2, 12kDa protein.
          Length = 109

 Score =  170 bits (413), Expect = 4e-42
 Identities = 80/103 (77%), Positives = 93/103 (90%)
 Frame = +2

Query: 125 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 304
           M+YQLYRNTT+GN+LQESLDELIQ  QITP LA++VLLQFDK+IN AL+ RV++R+ F+ 
Sbjct: 1   MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59

Query: 305 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKN 433
           G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGKN
Sbjct: 60  GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102


>BC014539-1|AAH14539.1|  468|Homo sapiens secretogranin III protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 152 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 313
           TI  TL + +  +++YG I+P   V  L   D+ I     N+++   T    KL
Sbjct: 301 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 354


>BC009511-1|AAH09511.2|  233|Homo sapiens SCG3 protein protein.
          Length = 233

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 152 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 313
           TI  TL + +  +++YG I+P   V  L   D+ I     N+++   T    KL
Sbjct: 66  TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 119


>AY359093-1|AAQ89451.1|  468|Homo sapiens secretogranin protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 152 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 313
           TI  TL + +  +++YG I+P   V  L   D+ I     N+++   T    KL
Sbjct: 301 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 354


>AF453583-1|AAL67431.1|  468|Homo sapiens secretogranin III protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 152 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 313
           TI  TL + +  +++YG I+P   V  L   D+ I     N+++   T    KL
Sbjct: 301 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 354


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,908,340
Number of Sequences: 237096
Number of extensions: 1165787
Number of successful extensions: 5578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5571
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)