Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_G01
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    32   0.063
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    31   0.11 
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    29   0.45 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.5  
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.5  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   5.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.5  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 318 QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREV 452
           +EK+ L++   R   Y DKV  LE EN  ++ E+ + + ++T E+
Sbjct: 272 EEKNDLESKLYRFEEYRDKVATLELENEKIQTELNSWKSLITNEL 316


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 306 QSRL-QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQE 434
           QS+L Q+K+ ++ LN+R++A  D++  +ES N     E++  ++
Sbjct: 819 QSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQ 862


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 448 RFPTXEGMYEHELQDARKLLDDTSREKAKLEIDLKRLYEEN 570
           R+P  + ++  EL+D   L+D   R +   E+DL ++ E N
Sbjct: 193 RYPGMQCLFAQELRDQETLVDFLERVRPYFEVDLIKMEEIN 233


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -2

Query: 219 CSDDTTLAFDEDV----TVFLVFVYLVGYI 142
           C+D  +L   E +    T++L  VY++GYI
Sbjct: 319 CTDSVSLLITEPIVVCFTLYLTVVYIIGYI 348


>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 303 RQSRLQE--KDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
           RQ  LQE   D L+NL   L+   DKVR+L S  S L   I+   E+    +    RN+
Sbjct: 20  RQRILQEHKNDILENLAFELS---DKVRRLRSNASLLASTIRMRGEMRIAAIPRAQRNM 75


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 455 GNLAGDHLLCGLYFTT*SRILTLQLAYFIDIGSQPVV 345
           G+LAG    C ++FT    ++ ++LAY  + G  P +
Sbjct: 123 GSLAGT---CSVFFTYPLELIRVRLAYITNTGKNPTL 156


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 315 LQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSN 458
           LQ+KD L+    R +   +K+  LES  S  +  I + ++  T E  N
Sbjct: 147 LQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKN 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,737
Number of Sequences: 5004
Number of extensions: 44952
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)