Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_G01
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 60 1e-09
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 60 1e-09
Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical pr... 46 2e-05
X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic int... 46 2e-05
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 46 3e-05
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 46 3e-05
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 42 4e-04
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 42 4e-04
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 40 0.002
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 40 0.002
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 40 0.002
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 40 0.002
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 40 0.002
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 39 0.003
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 39 0.003
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 39 0.003
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 39 0.003
U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate fi... 39 0.003
U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate fi... 39 0.003
X70832-1|CAA50180.1| 500|Caenorhabditis elegans Cytoplasmic int... 38 0.005
AF047657-10|AAK18940.2| 500|Caenorhabditis elegans Intermediate... 38 0.005
Z30973-1|CAA83223.1| 424|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical pr... 30 1.3
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 30 1.7
U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 29 3.8
U41556-10|AAM51520.1| 415|Caenorhabditis elegans Hypothetical p... 28 5.1
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 27 8.9
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 27 8.9
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 27 8.9
U41556-11|AAK39190.2| 365|Caenorhabditis elegans Hypothetical p... 27 8.9
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +3
Query: 309 SRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI 461
SRLQEKD L +LN RLA YIDKVRQLE EN+ L+ +I+ + V +E SN+
Sbjct: 41 SRLQEKDHLTSLNSRLATYIDKVRQLEQENNRLQVQIRDIEVVEKKEKSNL 91
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +3
Query: 309 SRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI 461
SRLQEKD L +LN RLA YIDKVRQLE EN+ L+ +I+ + V +E SN+
Sbjct: 41 SRLQEKDHLTSLNSRLATYIDKVRQLEQENNRLQVQIRDIEVVEKKEKSNL 91
>Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 55 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 110
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEE 567
MYE EL DA+KL+D+T++++ +E LK++ +E
Sbjct: 110 MYEGELVDAQKLIDETNKQRKDMEGQLKKMQDE 142
>Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 63 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 118
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEE 567
MYE EL DA+KL+D+T++++ +E LK++ +E
Sbjct: 118 MYEGELVDAQKLIDETNKQRKDMEGQLKKMQDE 150
>Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 63 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 118
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEE 567
MYE EL DA+KL+D+T++++ +E LK++ +E
Sbjct: 118 MYEGELVDAQKLIDETNKQRKDMEGQLKKMQDE 150
>Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 55 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 110
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEE 567
MYE EL DA+KL+D+T++++ +E LK++ +E
Sbjct: 110 MYEGELVDAQKLIDETNKQRKDMEGQLKKMQDE 142
>Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 63 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 118
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEE 567
MYE EL DA+KL+D+T++++ +E LK++ +E
Sbjct: 118 MYEGELVDAQKLIDETNKQRKDMEGQLKKMQDE 150
>Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 63 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 118
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEE 567
MYE EL DA+KL+D+T++++ +E LK++ +E
Sbjct: 118 MYEGELVDAQKLIDETNKQRKDMEGQLKKMQDE 150
>X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 592
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIXRNV 473
R SR +EK + +LNDRLA+YI+KVR LE++N L ++ + ++ NI RN+
Sbjct: 81 RDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNI-RNM 136
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R+SR +EK + LNDRLA+YI+KVR LE++N + +++
Sbjct: 64 RESRTREKKEMSELNDRLASYIEKVRFLEAQNRKMEKDL 102
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R+SR +EK + LNDRLA+YI+KVR LE++N + +++
Sbjct: 45 RESRTREKKEMSELNDRLASYIEKVRFLEAQNRKMEKDL 83
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQ 431
R +R +EK + LNDRLA+YI+KVR L+++N L +++ Q
Sbjct: 65 RDNREREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQ 107
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQ 431
R +R +EK + LNDRLA+YI+KVR L+++N L +++ Q
Sbjct: 65 RDNREREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQ 107
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQ 431
R R +EK + LNDRLA+YI KVR L ++N L ++ Q
Sbjct: 65 RDDREREKKEITELNDRLASYIGKVRFLAAQNRKLEADLNVLQ 107
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQ 431
R R +EK + LNDRLA+YI KVR L ++N L ++ Q
Sbjct: 65 RDDREREKKEITELNDRLASYIGKVRFLAAQNRKLEADLNVLQ 107
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQ 431
R R +EK + LNDRLA+YI KVR L ++N L ++ Q
Sbjct: 65 RDDREREKKEITELNDRLASYIGKVRFLAAQNRKLEADLNVLQ 107
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 318 QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI 461
+EK LQ LNDRL YID+V++LE +N L ++ + ++ S I
Sbjct: 49 KEKKTLQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEI 96
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 472 YEHELQDARKLLDDTSREKAKLEIDLKR 555
Y L ARK +DD +R KA++++ + R
Sbjct: 100 YSESLSTARKDIDDAARRKAEVDVKVAR 127
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 318 QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI 461
+EK LQ LNDRL YID+V++LE +N L ++ + ++ S I
Sbjct: 49 KEKKTLQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEI 96
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 472 YEHELQDARKLLDDTSREKAKLEIDLKR 555
Y L ARK +DD +R KA++++ + R
Sbjct: 100 YSESLSTARKDIDDAARRKAEVDVKVAR 127
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 318 QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI 461
+EK LQ LNDRL YID+V++LE +N L ++ + ++ S I
Sbjct: 80 KEKKTLQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEI 127
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 472 YEHELQDARKLLDDTSREKAKLEIDLKR 555
Y L ARK +DD +R KA++++ + R
Sbjct: 131 YSESLSTARKDIDDAARRKAEVDVKVAR 158
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R +R +EK + LNDRLA YI+KVR LE++N L +I
Sbjct: 45 RDAREREKREIGLLNDRLADYIEKVRFLEAQNRCLSHDI 83
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R +R +EK + LNDRLA YI+KVR LE++N L +I
Sbjct: 671 RDAREREKREIGLLNDRLADYIEKVRFLEAQNRCLSHDI 709
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R +R +EK + LNDRLA YI+KVR LE++N L +I
Sbjct: 671 RDAREREKREIGLLNDRLADYIEKVRFLEAQNRCLSHDI 709
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R +R +EK + +LN+RLA Y++KVR LE++N L +I
Sbjct: 49 RDNREREKVEIADLNNRLARYVEKVRFLEAQNRVLENDI 87
>U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate
filament, d protein1, isoform b protein.
Length = 465
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R +R +EK + +LN+RLA Y++KVR LE++N L +I
Sbjct: 47 RDNRDREKREIADLNNRLARYVEKVRFLEAQNRVLENDI 85
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEENXXXXXXXXXXXXXCTQAENLARHYET 648
M+E L + + E AKL ++L+ L E QAENL Y++
Sbjct: 352 MFEQSLTEKELAVTRMRDECAKLSVELETLVENQINLRSEIAHYRKLMEQAENLRTSYQS 411
Query: 649 RF 654
F
Sbjct: 412 DF 413
>U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate
filament, d protein1, isoform a protein.
Length = 575
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREI 419
R +R +EK + +LN+RLA Y++KVR LE++N L +I
Sbjct: 47 RDNRDREKREIADLNNRLARYVEKVRFLEAQNRVLENDI 85
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +1
Query: 469 MYEHELQDARKLLDDTSREKAKLEIDLKRLYEENXXXXXXXXXXXXXCTQAENLARHYET 648
M+E L + + E AKL ++L+ L E QAENL Y++
Sbjct: 352 MFEQSLTEKELAVTRMRDECAKLSVELETLVENQINLRSEIAHYRKLMEQAENLRTSYQS 411
Query: 649 RF 654
F
Sbjct: 412 DF 413
>X70832-1|CAA50180.1| 500|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 500
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQ 422
R +R +EK + LNDRLA YI+KVR L+++N L +I+
Sbjct: 27 RDAREREKREIGLLNDRLADYIEKVRFLKAQNHVLSHDIE 66
>AF047657-10|AAK18940.2| 500|Caenorhabditis elegans Intermediate
filament, c protein 1 protein.
Length = 500
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +3
Query: 303 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQ 422
R +R +EK + LNDRLA YI+KVR L+++N L +I+
Sbjct: 27 RDAREREKREIGLLNDRLADYIEKVRFLKAQNHVLSHDIE 66
>Z30973-1|CAA83223.1| 424|Caenorhabditis elegans Hypothetical
protein B0284.2 protein.
Length = 424
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 77 LALLSKTHANDETSQSCRDEPK 12
LAL K H N ETS+ C D+PK
Sbjct: 402 LALQEKKHGNRETSEHCPDDPK 423
>Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical
protein T16H12.6 protein.
Length = 566
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 152 WDTFLSQ*QTLTHNNVFSTRKAKELLALLSKTHAN 48
W + + QTL NV+ T K EL+ LL+ H N
Sbjct: 177 WRAMVRKFQTLFATNVYLTLKENELIGLLTDKHLN 211
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 369 DKVRQLESENSGLRREIQTTQEVV 440
D + QLESENS LRRE+ E++
Sbjct: 467 DSILQLESENSRLRREVTEKGELI 490
>U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical
protein F47D12.7 protein.
Length = 579
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 152 WDTFLSQ*QTLTHNNVFSTRKAKELLALLSKTHAN 48
W + + + QTL NV+ + K EL+ LL+ H N
Sbjct: 177 WRSMVRKFQTLFATNVYLSLKENELIGLLTDKHLN 211
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -1
Query: 475 RTFLXMLETSRVTTSCVVCISRRNPE-FSLSNWRTLSI*AANLSL----RFCNAS 326
RTFL L ++ SC +C R P L ++ + NL L +FCNAS
Sbjct: 2 RTFLITLALCQLALSCTLCHFRTPPRPRPLDQYKLPKLGGKNLDLEKMPKFCNAS 56
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -1
Query: 475 RTFLXMLETSRVTTSCVVCISRRNPE-FSLSNWRTLSI*AANLSL----RFCNAS 326
RTFL L ++ SC +C R P L ++ + NL L +FCNAS
Sbjct: 2 RTFLITLALCQLALSCTLCHFRTPPRPRPLDQYKLPKLGGKNLDLEKMPKFCNAS 56
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -1
Query: 475 RTFLXMLETSRVTTSCVVCISRRNPE-FSLSNWRTLSI*AANLSL----RFCNAS 326
RTFL L ++ SC +C R P L ++ + NL L +FCNAS
Sbjct: 2 RTFLITLALCQLALSCTLCHFRTPPRPRPLDQYKLPKLGGKNLDLEKMPKFCNAS 56
>U41556-10|AAM51520.1| 415|Caenorhabditis elegans Hypothetical
protein C25B8.7 protein.
Length = 415
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 554 LFKSISSLAFSRDVSSNSFLAS---WSSCSYIPSNVGNLAGDHLL 429
+ K+ S+ +S +F+ + W+SCS +P + NLA H++
Sbjct: 246 VIKTSSASKIENKATSFAFIFATTLWTSCSLLPYRIANLARIHII 290
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 318 QEKDALQNLNDR-LAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI 461
+ K +L+ D+ + AY +K+R + E L+RE++ V R+ + +
Sbjct: 251 ERKTSLEVQQDQYILAYEEKIRTMSQEMEALKRELELKNGPVQRKTTQV 299
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 324 KDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQE 434
K+ LN++ + + K+ ++ SEN L R++Q +E
Sbjct: 172 KNKTMKLNEKNSQFQTKLAEISSENRNLERKVQKFRE 208
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 409 VVKYKPHRRWSPARFPTXEGMYEHELQDARKLLDDTSR---EKAKLEIDLKRLYEE 567
V + KP + A HE ++A KLLD R EK ++E +L+ L E+
Sbjct: 51 VQEEKPPAEMTEAEIAMLAAKKRHEEEEAAKLLDYEQRRVLEKEQIEQELRELKEK 106
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 409 VVKYKPHRRWSPARFPTXEGMYEHELQDARKLLDDTSR---EKAKLEIDLKRLYEE 567
V + KP + A HE ++A KLLD R EK ++E +L+ L E+
Sbjct: 51 VQEEKPPAEMTEAEIAMLAAKKRHEEEEAAKLLDYEQRRVLEKEQIEQELRELKEK 106
>U41556-11|AAK39190.2| 365|Caenorhabditis elegans Hypothetical
protein C25B8.5 protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 551 FKSISSLAFSRDVSSNSFLASWSSCSYIPSNVGNLAGDHL 432
FK+ L+ + ++ +W+SCS +P + NLA HL
Sbjct: 190 FKNKKVLSQVKSLAFIFATTTWTSCSLLPYRIVNLARIHL 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,820
Number of Sequences: 27780
Number of extensions: 259437
Number of successful extensions: 807
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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