Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F22
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...   175   5e-45
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    79   5e-16
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    55   1e-08
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    42   1e-04
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    38   0.001
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.44 
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    29   0.58 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   5.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.5  

>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score =  175 bits (426), Expect = 5e-45
 Identities = 78/161 (48%), Positives = 112/161 (69%)
 Frame = +2

Query: 167 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 346
           GT+I A  +  GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24  GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83

Query: 347 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 526
            Y+L+ ++++ G  P V TAA +  E+CY  ++ L AG++VAG+D+K G  +YSIP+GG 
Sbjct: 84  KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143

Query: 527 VQRQAXXXXXXXXXXXXXXXDANFKPXMTKEEAKKFVTDTL 649
           + +Q                DANF+  MT+EEA +F+ + +
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAV 184


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 41/163 (25%), Positives = 82/163 (50%)
 Frame = +2

Query: 161 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 340
           STGT+I+       +V+GAD+R T G  IA++   KL  I+  I+C  +G+AADT+ +  
Sbjct: 33  STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92

Query: 341 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 520
           +++ ++  H +     P V TA  + ++  + Y+  + A +++ G+D  KG  +++I   
Sbjct: 93  MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151

Query: 521 GMVQRQAXXXXXXXXXXXXXXXDANFKPXMTKEEAKKFVTDTL 649
           G   +                 +  ++P + + EA + V + +
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAI 194


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
 Frame = +2

Query: 167 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 346
           GT+ +A  +  G+V+  DSR + G  IA++   K+ +I   +    +G AAD Q    ++
Sbjct: 61  GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120

Query: 347 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 523
                 H++   +   V  A+ I   + Y+Y+   L  G ++AG   K G  +Y I   G
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAG-TGKGGTALYYIDSDG 179

Query: 524 MVQRQAXXXXXXXXXXXXXXXDANFKPXMTKEEA 625
              +                 D+ ++  ++K+EA
Sbjct: 180 TRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEA 213


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
 Frame = +2

Query: 167 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 346
           G + +A   DG  ++  D+R+  G  I  R   ++ ++ D +    SG  AD  A+   +
Sbjct: 13  GGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRI 72

Query: 347 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 523
              ++ +          ++ A + R L Y  R         VAG DK+   +IYS    G
Sbjct: 73  QQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVG 132

Query: 524 MVQRQ 538
             +R+
Sbjct: 133 SYERE 137


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +2

Query: 155 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 334
           P  TG+S++A +F  GV+I AD+  + G+       ++LTK+ D       G  +D Q I
Sbjct: 39  PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 194 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 304
           + G+V+G DSR    +Y+   +T+  T  TDQI   R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/78 (21%), Positives = 33/78 (42%)
 Frame = +2

Query: 167 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 346
           GT+ +A   +  +VIG + +        +    K+  + + +    +G  AD + + D  
Sbjct: 30  GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88

Query: 347 TYHLNFHKMELGDPPLVE 400
                 HK+ L DP  +E
Sbjct: 89  RVEAQNHKLNLADPVSIE 106


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 386 PPLVETAAAIFRELC 430
           PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 159 IVRELQSWHASLMVESSLELIPVPQQALTSPIES 260
           ++  L SW  SL +     +IP P++ +T P++S
Sbjct: 583 LIGVLSSWLKSLFLSLLDLVIPNPKENITLPVQS 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,063
Number of Sequences: 5004
Number of extensions: 43740
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)