Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F19
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 126 3e-30
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 58 1e-09
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 1.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 1.8
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 26 4.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.6
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 5.6
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 25 9.8
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 9.8
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 9.8
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 126 bits (304), Expect = 3e-30
Identities = 74/185 (40%), Positives = 106/185 (57%), Gaps = 2/185 (1%)
Frame = +1
Query: 118 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 297
M +L ET AGYAIFK D+ L + D L ++ +PEGAS ++KL++F KFE
Sbjct: 1 MFILTETAAGYAIFKAKDKL-LKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59
Query: 298 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREK--FDLQCVSNTNVQELLR 471
+EG + L+V D KLG+AI + + + +S+++VQ+L R
Sbjct: 60 SALVEGKVSSKLSSLLEGLSDSK-SSTLVVADPKLGNAINKLPGLEFEIISDSSVQDLYR 118
Query: 472 CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPXXIXNTMIVQXXCXXXXXXKEL 651
IR + SL++GL ++ AM+LGL+HSLSR+KLKFSP + +TMIVQ KEL
Sbjct: 119 GIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFSPDKV-DTMIVQAIALLDDLDKEL 177
Query: 652 NNYIM 666
N Y M
Sbjct: 178 NTYAM 182
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 58.0 bits (134), Expect = 1e-09
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 5/186 (2%)
Frame = +1
Query: 124 VLFETPAGYAIFKLLDESKLS-EIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXXX 300
+L+E+ GY++F ++ +++ + + VV+L++F+ F++
Sbjct: 5 LLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENAN 64
Query: 301 XXIEGXXXXXXXXXXXXXXXXEVQDQ---LLVGDSKLGSAIREKFD-LQCVSNTNVQELL 468
EG + + L V D L ++I+ + D ++C ++ Q+LL
Sbjct: 65 DISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLL 124
Query: 469 RCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPXXIXNTMIVQXXCXXXXXXKE 648
R IR D LL L + LGL HS SR K+KF+ N MI+Q K+
Sbjct: 125 RGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDN-MIIQAIAILDQLDKD 183
Query: 649 LNNYIM 666
+N + M
Sbjct: 184 INTFAM 189
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 406 SAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 576
SA+ + L+C++ + L +C ++ SL+ G+P T L SL K K
Sbjct: 922 SALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKK 978
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 479 RIHRSSSWTLVFDTHCKS--NFSLMALPSLESPTRS 378
R HRSS V+ HC + ++ LPSL TR+
Sbjct: 221 REHRSSGKNFVYCDHCSNVYHYDCSPLPSLNKETRN 256
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 449 LMSRNCSGVFAHRWTVS 499
+ SR C VFAHRW S
Sbjct: 8 IYSRKCECVFAHRWKPS 24
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 165 QLKYGIARRCLE*NQHTGSTLIQLFNKYNQYH 70
Q+ YG+++ + G+T +Q FN+Y H
Sbjct: 921 QIAYGVSKFFTSLTRALGNTSVQDFNEYKMIH 952
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 521 SFLGSPARRLSICERIHRSSSWTLVFDT 438
S+L +P RLSI + + SSS T +T
Sbjct: 436 SYLAAPKERLSISDNMSSSSSQTATVNT 463
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 121 LVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFV 261
L L E Y LLDE KLS + +Y+ G +K+ +F+
Sbjct: 1471 LPLVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFL 1517
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 508 VQLGDCPSVSEYTGAVPGH*YLIHIVSQI 422
VQ+ DC + + Y A G Y+IH +++
Sbjct: 56 VQVPDCRAPNAYVEAAKGVDYVIHAATEV 84
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 364 EVQDQLLVGDSKLGSA-IREKFDLQCVSNTNVQELLRCIRSQMDSLLAGL 510
E D++ G G+A RE F +CV L C+R+ ++ GL
Sbjct: 356 EGSDEIFGGYLYFGNAPSREAFHSECVRRVKNLHLSDCLRANKSTMAWGL 405
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 496 LLAGLPKKEMTAMALGLAHSL 558
L+AG P TA+A+G+A SL
Sbjct: 69 LMAGPPSTGKTAIAMGMAQSL 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,907
Number of Sequences: 5004
Number of extensions: 40967
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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