Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F19
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical ... 141 5e-34
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 3.0
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.0
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 28 6.8
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 28 6.8
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 28 6.8
AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical ... 28 6.8
>AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical
protein W01B11.3 protein.
Length = 487
Score = 141 bits (341), Expect = 5e-34
Identities = 78/183 (42%), Positives = 111/183 (60%)
Frame = +1
Query: 118 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 297
MLVLFE AGYA+FKL +E KL +DN+++EF+T E A ++L +F KF+
Sbjct: 1 MLVLFEVAAGYAVFKLSNEKKLKNVDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEAT 60
Query: 298 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 477
EG + ++L VGD+KLG+ I+EK L CV ++++ EL+R +
Sbjct: 61 SEITEG--KLSKTLKKLLKSSVDETEKLAVGDAKLGNLIKEKLSLNCVHDSSINELMRGV 118
Query: 478 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPXXIXNTMIVQXXCXXXXXXKELNN 657
R+ ++ LLA K+EM AM L +AHSL+RYK+KF+P I +TMIVQ KELNN
Sbjct: 119 RAHIEDLLAE-HKEEMNAMNLAVAHSLARYKVKFNPEKI-DTMIVQAVSLLDDLDKELNN 176
Query: 658 YIM 666
Y+M
Sbjct: 177 YVM 179
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 58.8 bits (136), Expect = 3e-09
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 6/187 (3%)
Frame = +1
Query: 124 VLFETPAGYAIFKL--LDESKL--SEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 291
VL+E AGYA+ K+ D++ L E+D + + S +V+L +F F++
Sbjct: 8 VLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYK---FSQIVELASFDPFKNTEAALE 64
Query: 292 XXXXXIEGXXXXXXXXXXXXXXXXEVQDQLL-VGDSKLGSAIREKF-DLQCVSNTNVQEL 465
EG + + +L + DSKL ++ E F DL+ V + E+
Sbjct: 65 NCNSISEGLAHPDLTNFLQKSLPKKKKHVVLGINDSKLAGSLTEAFPDLKLVFGGVITEI 124
Query: 466 LRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPXXIXNTMIVQXXCXXXXXXK 645
LR R + L LP ++ L L HS SR K+KF + N M++Q K
Sbjct: 125 LRGTRVHFERLAKNLPHHSLSKAQLSLGHSYSRSKVKFDVHRVDN-MVIQSIALLDQLDK 183
Query: 646 ELNNYIM 666
++N + M
Sbjct: 184 DINLFGM 190
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 124 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFE 270
VL TPA + L E SE+ + ++ E AS V++ K VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 124 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFE 270
VL TPA + L E SE+ + ++ E AS V++ K VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 255
KLL + +LS N+Y++ N PE TV K N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 255
KLL + +LS N+Y++ N PE TV K N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 255
KLL + +LS N+Y++ N PE TV K N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257
>AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical
protein R02D3.5 protein.
Length = 328
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 389 VTLSWEVPLEKNLTYNVYQILMSRNCSGVFAHRW 490
V +++VPLEK LT+ ++ +L+ + + +R+
Sbjct: 157 VVRTFKVPLEKELTFALHMLLLDNRNNSAYNYRY 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,002
Number of Sequences: 27780
Number of extensions: 232882
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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