Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F19
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.28 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 84 YNQYHLIY*VSSRKILSINKTTNSRYND 1
          +N  H+IY V+  KI   N  T   Y+D
Sbjct: 13 FNTLHIIYSVAGLKIFEANPDTKRLYDD 40


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 451 NVQELLR-CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSP 585
           N  ++LR CI+ ++  L+    K ++    L +  S   YKL++ P
Sbjct: 49  NTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEP 94


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 451 NVQELLR-CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSP 585
           N  ++LR CI+ ++  L+    K ++    L +  S   YKL++ P
Sbjct: 49  NTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEP 94


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 136 SRIEPTYWKHTYTTIQQI 83
           ++++PTY+ HTY   + +
Sbjct: 33  TKLQPTYFHHTYIIYESL 50


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 136 SRIEPTYWKHTYTTIQQI 83
           ++++PTY+ HTY   + +
Sbjct: 33  TKLQPTYFHHTYIIYESL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,450
Number of Sequences: 438
Number of extensions: 2661
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)