Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F18
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 31 0.11
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 4.1
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 5.5
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 26 5.5
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 5.5
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 25 7.2
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 304 QTFTIFWSLIDNMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIKRGYAKT--LEEADEK 477
+ F+ +++N + ++ ++ TL C R + ++K A L E
Sbjct: 960 ELFSKVVGILNNAEEIKNKIATL---CERSQEKDFALRPSIDEVKEALASAEKLPILSES 1016
Query: 478 TTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLEKRSLELDVN 627
T +MYD+V ++RR K LE + + + ++ S L +N
Sbjct: 1017 TVTLQKMYDVVLEWIRRGKRLFGKANAPLEILGQHLDYVEKRNSASLSLN 1066
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 454 TLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLEKR 606
+LE ADE L +Q+ Y + +TE+ + EL A+ + E LE +
Sbjct: 1563 SLENADEIARLRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQ 1613
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/29 (37%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +1
Query: 565 EADNKGITELLEK-RSLELDVNTNHTSTS 648
E+ + TE+LE+ +++E +++TNHT+ S
Sbjct: 902 ESPSSAFTEILERLKAIEQNISTNHTNDS 930
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +1
Query: 331 IDNMDTLEKRVRTLFGGCRRGE--INTD-QANTEFSDIKRGYAKTLEEADEKTTLANQMY 501
++ ++L K + T F G +NT+ +A T S + + E D+ +
Sbjct: 904 VEERNSLIKNIVTRFTQLNTGSKPVNTNVEALTTISSMNQAVNMNFRELDKSIQEFKRKC 963
Query: 502 DLVDRYLRRLDTELHKFKCELEADNKGITELLEKRSL 612
++R + TEL K LEA +K +++L E+ L
Sbjct: 964 QSMEREFK---TELRKLDGVLEARSKRLSQLEERVKL 997
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 445 YAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLEKRSLELDV 624
YAK ADE L Q R+L ++ + + + + T+ L++ +LELD
Sbjct: 566 YAKQFPLADETYKLECQRNTYFARWLAACRSDPRCRRLDFQHFLQRPTQRLQRYTLELDT 625
Query: 625 NTNHTSTSN 651
HT S+
Sbjct: 626 ILKHTEQSS 634
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 110 NLTNLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLS 238
+L LK++ T + LED EHL + ++ F ++R+ S
Sbjct: 634 SLEALKNENQTLLKNLEDSTARYEHLQKSFKNVFNQLRKQQPS 676
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +1
Query: 469 DEKTTLANQMYDLVDR-------YLRRLDTELHKFKCELEADNKG-ITELLEK 603
DE TL N +Y+L+DR YLRR K KC+ +++ + +L+EK
Sbjct: 222 DEMKTLYNCLYELIDRDKKSIYNYLRRKYNPFKK-KCKWTIEDEAELKKLVEK 273
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 155 LEDYLEMIEHLPQELRDRFTEMREMDLSVQ 244
L D+ + I +P+ + +FT ++E+D V+
Sbjct: 12 LNDFTDAIVSVPESVCGKFTSLKEIDAQVR 41
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 322 WSLIDNMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIK 438
W I+N+ L K++ +GE NT+ +TE + +K
Sbjct: 6 WQKIENVYLLGKKIDKAKRMANKGESNTNMLSTEENIVK 44
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 487 ANQMYDLVDRYLRRLDTELHKFKCELEADN 576
+N++ + Y R L++ H+F C+ A+N
Sbjct: 164 SNRLNEQQSFYQRHLESTRHEFSCQKNAEN 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,204
Number of Sequences: 5004
Number of extensions: 49368
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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