Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F18
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 46 3e-05
03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913... 42 4e-04
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 30 1.4
06_01_0658 + 4772855-4772983,4773108-4773218,4773335-4773366,477... 29 2.4
03_05_0675 + 26630466-26632070 29 2.4
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 29 4.3
07_01_0358 - 2631214-2632992 28 5.6
05_04_0311 - 20120172-20122115 28 5.6
12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135 27 9.9
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 27 9.9
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 9.9
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 337 NMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIKRGYAK-TLEEADEKTTLANQMYDLVD 513
N ++ + + G G I D A +FSD K + ADEK LA+Q YDLVD
Sbjct: 39 NEQRCQQEIEDIKHGLESGSITYDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVD 98
Query: 514 RYLRRLDTELHKFKCELEADNKGIT 588
++++LD + K + EL + + T
Sbjct: 99 AHIQQLDQFMRKLE-ELRQEKEAAT 122
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 146 MLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQ 244
M +LED+ +E LP L+ ++ MRE+D S+Q
Sbjct: 1 MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQ 33
>03_05_1128 +
30590727-30590772,30590868-30590939,30591181-30591371,
30592004-30592067,30592713-30592963,30593066-30593104,
30593193-30593213
Length = 227
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Frame = +1
Query: 340 MDTLEKRVRTLFG----GCRRGEINTDQANTEF--SDIKRGYAKTLEEADEKTTLANQMY 501
M +++++ L G G R ++ D++ +E DI+ L EK LA Q Y
Sbjct: 42 MGQTKEQIKYLLGVPSHGFDRSNMDDDESASERMKKDIEASQDNALSLCTEKVLLARQAY 101
Query: 502 DLVDRYLRRLDTELHKFKCELEADNK 579
DL++ +++RLD +L +F +L+ + K
Sbjct: 102 DLIESHIKRLDEDLGQFAEDLKQEGK 127
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +1
Query: 322 WSLIDNMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIKRGY---AKTLEEADEKTTLAN 492
W L+ +D EKR+ L +R E + + K+ + K L EA+ +
Sbjct: 1262 WELLQKVDEAEKRINKLLENAQRLEKHATARESLLLKTKQSHDSTTKALVEAESRNRELT 1321
Query: 493 QMYDLVDRYLRRLDTELHKFKCELEADNKGITEL 594
+ ++ DR + L+ +++ + E A+ + E+
Sbjct: 1322 KSFEDSDRKINLLEDSVNRLE-ERIAEKDSLLEI 1354
>06_01_0658 +
4772855-4772983,4773108-4773218,4773335-4773366,
4773469-4773637,4773728-4773934,4774318-4774362
Length = 230
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 334 DNMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIKRGYAKTLEE 465
D EKR+R +GG RR N A E D A+ LEE
Sbjct: 80 DEFQDFEKRIRRSYGGKRRDLSNRVYATDEQRDYAINAAQELEE 123
>03_05_0675 + 26630466-26632070
Length = 534
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 517 YLRRLDTELHKFKCELE---ADNKGITELLEKRSLELDVNTNHTSTS 648
Y+R L+ + + E+E A N + ELL +R+ E +++HTS S
Sbjct: 487 YVRELEKRVQELSTEVEEEMARNAHLQELLHERACENHTDSSHTSGS 533
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 107 SNLTNLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQSKL 253
S+ N KH+ + +LYL+ L I + P + T++ E+ L+ S L
Sbjct: 461 SHPENEKHRMMNNLLYLDLTLLSINNFPNDFFQGMTKLEELMLAGCSSL 509
>07_01_0358 - 2631214-2632992
Length = 592
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 510 NQIIHLVGKCGLFVSLF*SFGIAPLNIRKL 421
N ++HL G CGLF S F P+ R L
Sbjct: 155 NSLVHLYGACGLFESAHKVFDEMPVRGRNL 184
>05_04_0311 - 20120172-20122115
Length = 647
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 86 VQS*HFNSNLTNLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQSKLSCHK 265
V + +F + K + L +L L + HLP + F +R +DLS L +
Sbjct: 531 VSTDYFPQLKSKCKLERLRTLLVLRSSSLSLSHLPSKFLSEFKNLRVLDLSESDILELPE 590
Query: 266 ITFIHTIQLHY 298
T LHY
Sbjct: 591 -TISQLFHLHY 600
>12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135
Length = 703
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 526 RLDTELHKFKCELEADNKGITELLEKRSLELDVNTN---HTS 642
+LD LH+ +C A + GI L +E+++N N HTS
Sbjct: 609 KLDFRLHELECLNGASDLGIQHLSALCKVEVEINCNCFKHTS 650
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +1
Query: 334 DNMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVD 513
D++ LEK L R E+N D + E D+ EEA + L + D D
Sbjct: 315 DSLAALEKDKDRLLTALRDAELNYDSVDLELQDVLDSRIAAEEEA--ASLLEHFAKDATD 372
Query: 514 RYLRRLDTELHKFKC-ELEADNKGITELLEKRSLELDVNT 630
+ E + E+E + + ELLE + LE +V +
Sbjct: 373 -HTDSASKEAEEISLKEIEGWRESM-ELLETKKLETEVES 410
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -3
Query: 529 IVEDTYQPNHTFGWQVWSFRQPLLKFWHSPA*YPKTQYWLDRYLFHHDDIHQKEYGLFSQ 350
+V +Y + F VW+ L + +P +W +Y HDD K Y FS+
Sbjct: 514 VVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDF--KRYSYFSR 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,540
Number of Sequences: 37544
Number of extensions: 262998
Number of successful extensions: 608
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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