Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F18
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032644-4|CAA21665.1| 490|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC024781-1|AAN39662.2| 367|Caenorhabditis elegans Hypothetical ... 40 0.002
Z81104-10|CAB03214.1| 293|Caenorhabditis elegans Hypothetical p... 29 3.8
AL033510-11|CAA22071.1| 293|Caenorhabditis elegans Hypothetical... 29 3.8
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z70210-3|CAA94150.1| 267|Caenorhabditis elegans Hypothetical pr... 28 6.7
U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical p... 28 6.7
AF063007-1|AAC16430.2| 730|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81067-2|CAB02977.1| 274|Caenorhabditis elegans Hypothetical pr... 27 8.8
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 8.8
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 8.8
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 27 8.8
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 8.8
>AL032644-4|CAA21665.1| 490|Caenorhabditis elegans Hypothetical
protein Y51H1A.4 protein.
Length = 490
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 466 ADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLEKR 606
A K +A +M +L+ +Y L+ E F+CE+EADN G+TE++EKR
Sbjct: 77 AQRKYLIAEKMQELLKKYKVHLEKEKTTFQCEMEADNSGVTEMIEKR 123
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/37 (48%), Positives = 30/37 (81%)
Frame = +2
Query: 146 MLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQSKLS 256
ML+L+D+LEM++ LP EL++R E+R +D V+S+L+
Sbjct: 1 MLFLDDFLEMLDELPAELKERSDEIRRIDNEVESRLN 37
>AC024781-1|AAN39662.2| 367|Caenorhabditis elegans Hypothetical
protein Y43H11AL.1 protein.
Length = 367
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 322 WSLIDNMDTLE-KRVRTLFGGCRRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQM 498
W ++D+ E ++ + ++ E +A + +D+K + E A++KT LA +
Sbjct: 32 WDEQIDVDSAEAQKFEKIMFDTQKSEKERVEAGRKLADLK---CRIRELAEKKTLLAERN 88
Query: 499 YDLVDRYLRRLDTELHKFKCELEADNKGITELLEK 603
+ V +L+ + KCELE DN G TE E+
Sbjct: 89 HRTVQAVYTKLNELAYHCKCELETDNPGSTEQRER 123
>Z81104-10|CAB03214.1| 293|Caenorhabditis elegans Hypothetical
protein Y40H7A.8 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 81 NSNKLVNRYYVDVYLNVTLH 22
N+NK+ NRYY+ VYL + ++
Sbjct: 113 NANKIWNRYYILVYLGILVY 132
>AL033510-11|CAA22071.1| 293|Caenorhabditis elegans Hypothetical
protein Y40H7A.8 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 81 NSNKLVNRYYVDVYLNVTLH 22
N+NK+ NRYY+ VYL + ++
Sbjct: 113 NANKIWNRYYILVYLGILVY 132
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 415 NTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNK 579
N + SDI+ +K E+ADE +LA ++++ +R R + EL + E+E K
Sbjct: 253 NGDMSDIELEASKMKEQADEMRSLAEEVFN--ER--RAKEEELQGLEIEVEEQKK 303
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 394 EINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRY 519
E DQ EF D+ + L E E T + + DLVD Y
Sbjct: 107 ECGKDQMLEEFKDVLKLARDRLSERIEMTAIESGFRDLVDEY 148
>Z70210-3|CAA94150.1| 267|Caenorhabditis elegans Hypothetical
protein K08H2.3 protein.
Length = 267
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +2
Query: 467 LTKRPH--LPTKCMIWLIGIFD 526
L KRPH +PT+ ++W GI D
Sbjct: 41 LDKRPHGEIPTRLLLWRFGIID 62
>U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical
protein T22F3.8 protein.
Length = 482
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -1
Query: 603 LLKQFCYPFVVCFKLTLEFMQLCI*SSKIPINQIIHLVGKCGLFVSLF*SFGIAPLNIRK 424
L+ C P +CF + + +Q KI I I VG GLF F S G+ P+ R
Sbjct: 321 LIHGICLPVRLCFGIISDKIQFISEPVKIQIFNTIS-VGGSGLF---FASIGLIPMEYRG 376
Query: 423 LSI 415
S+
Sbjct: 377 WSV 379
>AF063007-1|AAC16430.2| 730|Caenorhabditis elegans Hypothetical
protein R119.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 316 IFWSLIDNMDTLEKRVRTLFGGCRRGE-INTDQANTEFSDIKRGYAKTLE 462
IF+ L ++DTLE ++T G + G TD+ ++++DI + + + L+
Sbjct: 505 IFYDLKSSIDTLEHNLKTT--GFKSGAGAETDELRSDWNDIYQNFNRFLD 552
>Z81067-2|CAB02977.1| 274|Caenorhabditis elegans Hypothetical
protein F23A7.3 protein.
Length = 274
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/98 (21%), Positives = 40/98 (40%)
Frame = +1
Query: 298 LYQTFTIFWSLIDNMDTLEKRVRTLFGGCRRGEINTDQANTEFSDIKRGYAKTLEEADEK 477
LY+T + ++ LE RTL C R + + + E +K ++ +
Sbjct: 153 LYETKRELTEVRISLMNLEAEHRTLQTNCNRKDTQLFERHEEIQQLKDHIQWKSKDTEVA 212
Query: 478 TTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITE 591
+ QM + + + + + K K E+ A +K I E
Sbjct: 213 AKMVFQMQNKHKEEVEKYTSTISKLKEEVVAKDKEIVE 250
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 263 YGKIAYFGQTNPFLSFQ*ICLAVLAVDVLSF 171
+ +I Y QTNP+L I L + VDV F
Sbjct: 549 FARIIYLFQTNPYLGPLQISLGCMLVDVAKF 579
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 263 YGKIAYFGQTNPFLSFQ*ICLAVLAVDVLSF 171
+ +I Y QTNP+L I L + VDV F
Sbjct: 529 FARIIYLFQTNPYLGPLQISLGCMLVDVAKF 559
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 469 DEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELL 597
D K TL +QM +++D Y L+ + + ELE D +TE L
Sbjct: 762 DVKGTLIDQMIEMIDEYSANLEQIVAERTRELEQD-MSVTENL 803
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 263 YGKIAYFGQTNPFLSFQ*ICLAVLAVDVLSF 171
+ +I Y QTNP+L I L + VDV F
Sbjct: 529 FARIIYLFQTNPYLGPLQISLGCMLVDVAKF 559
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,347
Number of Sequences: 27780
Number of extensions: 262970
Number of successful extensions: 742
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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