Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F13
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   5.4  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   9.5  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +2

Query: 425 TDGYWPDVSREISRY----PAKSLYPAGVKTXIVGYDLCPAVT 541
           T+GY P V RE   Y     + S+ P  V T + G  L P  T
Sbjct: 564 TEGYTPSVVREEKNYSEPNASPSVIPPRVPTPVPGRTLSPKPT 606


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 453 RDTSGQYPSVNEHENWRFIREVGTENVQXLSGR*SVL---NLQFVWN 322
           R   G   +  + +N RF+ E GTE++  + G   V    N Q+VW+
Sbjct: 66  RTVHGHARNFVKADNSRFVDEKGTEHLDLIGGVGVVTVGNNNQYVWD 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,498
Number of Sequences: 5004
Number of extensions: 50953
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)