Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F13
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208...    29   2.4  
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604...    28   7.4  
12_02_1160 + 26592537-26593046,26593588-26593635                       27   9.8  
05_07_0187 + 28267022-28267528                                         27   9.8  

>07_03_0472 -
           18519169-18519285,18519561-18519671,18520689-18520816,
           18520965-18521147,18521337-18521427
          Length = 209

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 176 QGDGHHGICGFGKRIHTGVVVEPVIYPGASP-QLAHQP 286
           Q  G +G CG     + G+VV    +P ASP ++AH P
Sbjct: 52  QARGGNGACGRVDGSNVGIVVSQQFFPPASPCKVAHLP 89


>06_01_0806 -
           6048042-6048138,6048461-6048550,6049362-6049425,
           6049504-6049552,6050403-6050459,6050953-6051024,
           6051912-6052003,6052542-6052614,6052686-6052748,
           6052837-6052901,6053803-6053890,6053974-6054015,
           6054097-6054188,6054601-6054688,6055134-6055225,
           6055368-6055419
          Length = 391

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 277 TSTLITAESEIATXNVPHKLEIEYGSTPGQXLDIFGTDLPNESPIL 414
           T  ++  + E+ T +   +++I  G  PGQ + + G  LPN++  L
Sbjct: 272 TQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLRGKGLPNQAGYL 317


>12_02_1160 + 26592537-26593046,26593588-26593635
          Length = 185

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 154 RRERG*DTGRRSPWNLWIWKENTHR 228
           RR+R      R PW  WIW +  HR
Sbjct: 151 RRQRWAVDLPRQPWQRWIWVQVVHR 175


>05_07_0187 + 28267022-28267528
          Length = 168

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 61  FRVKMNPFTKITIKFKRLFEIYLFXKKTPSLRRER 165
           FRV+M+P     +K  RLF   L  + TP+ RR+R
Sbjct: 117 FRVRMHPIANRILKAVRLF---LTARSTPTGRRDR 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,712
Number of Sequences: 37544
Number of extensions: 336693
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)