Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F13
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132824-1|AAI32825.1|  303|Homo sapiens AFMID protein protein.        49   2e-05
BC114371-1|AAI14372.1|  714|Homo sapiens FERM domain containing ...    30   8.2  
AL109749-2|CAI42080.1|  594|Homo sapiens novel protein protein.        30   8.2  
AK125336-1|BAC86135.1|  714|Homo sapiens protein ( Homo sapiens ...    30   8.2  

>BC132824-1|AAI32825.1|  303|Homo sapiens AFMID protein protein.
          Length = 303

 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +2

Query: 404 LQFSCSFTDGYWPDVSREISRYPAKSLYPAGVKTXIVGYDLCPAVTLAEVVNXIQNAARY 583
           L F   F  GYW   S++ S +    L   GV   IV Y + P  TL  +V+ +  +  +
Sbjct: 88  LPFFLFFHGGYWQSGSKDESAFMVHPLTAQGVAVVIVAYGIAPKGTLDHMVDQVTRSVAF 147

Query: 584 IFEYAEKMNSXGVYFAGHGTGAH 652
           + +     ++ G+Y  GH  GAH
Sbjct: 148 VQK--RYPSNKGIYLCGHSAGAH 168


>BC114371-1|AAI14372.1|  714|Homo sapiens FERM domain containing 7
           protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 254 PGASPQLAHQP**QQRAK*PXITFHTNWRLSTDQRPDRXWTFSVPTSRMNLQFSCSFTDG 433
           P A P L HQ   Q  +  P I     +    +  PD    FS  +S  + Q SC F+  
Sbjct: 398 PEADPTLLHQS--QSSSSFPFIYMDPVFNTEPNPNPDPRDIFSERSSLSSFQTSCKFSGN 455

Query: 434 YWPDVSREISRY-PAKSL 484
           +    S   S+  PAK L
Sbjct: 456 HMSIYSGLTSKVRPAKQL 473


>AL109749-2|CAI42080.1|  594|Homo sapiens novel protein protein.
          Length = 594

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 254 PGASPQLAHQP**QQRAK*PXITFHTNWRLSTDQRPDRXWTFSVPTSRMNLQFSCSFTDG 433
           P A P L HQ   Q  +  P I     +    +  PD    FS  +S  + Q SC F+  
Sbjct: 278 PEADPTLLHQS--QSSSSFPFIYMDPVFNTEPNPNPDPRDIFSERSSLSSFQTSCKFSGN 335

Query: 434 YWPDVSREISRY-PAKSL 484
           +    S   S+  PAK L
Sbjct: 336 HMSIYSGLTSKVRPAKQL 353


>AK125336-1|BAC86135.1|  714|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43346 fis, clone NT2RI3008652, moderately
           similar to Homo sapiens mRNA for CDEP. ).
          Length = 714

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 254 PGASPQLAHQP**QQRAK*PXITFHTNWRLSTDQRPDRXWTFSVPTSRMNLQFSCSFTDG 433
           P A P L HQ   Q  +  P I     +    +  PD    FS  +S  + Q SC F+  
Sbjct: 398 PEADPTLLHQS--QSSSSFPFIYMDPVFNTEPNPNPDPRDIFSERSSLSSFQTSCKFSGN 455

Query: 434 YWPDVSREISRY-PAKSL 484
           +    S   S+  PAK L
Sbjct: 456 HMSIYSGLTSKVRPAKQL 473


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,188,208
Number of Sequences: 237096
Number of extensions: 1776283
Number of successful extensions: 3394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)