Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F09
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.44
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.77
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 5.5
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.5
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 26 5.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.2
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 9.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.5
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 9.5
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +1
Query: 340 KAKEALEQSRQNIERTAXELRXAHPDVEKNATALREKLQAXVQNTVQESQKLAKKVSSNV 519
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 520 QETNEKLAP 546
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.77
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +1
Query: 349 EALEQSRQNIERTAXELRXAHPDVEKNATALREKLQAXVQNTVQESQKLAKKVSSNVQET 528
EALE+ +Q +E E ++ +L E+ V+N +E ++ K +
Sbjct: 1362 EALEKEKQELETKLQETAKETDTFKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAW 1417
Query: 529 NEKLAPKIKAAYDDFAKNTQEVIKKIQE 612
NEK K++ FA QE+ K +E
Sbjct: 1418 NEKCENLKKSSLTRFAHLKQELTNKNKE 1445
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +1
Query: 415 DVEKNATALREKLQAXVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEV 594
+++KN AL EK + ++ +QE+ K V NE++ K KNT+
Sbjct: 1356 ELKKNCEAL-EKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLA 1414
Query: 595 IKKIQEAANAKQ 630
++ N K+
Sbjct: 1415 AAWNEKCENLKK 1426
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/88 (22%), Positives = 45/88 (51%)
Frame = +1
Query: 355 LEQSRQNIERTAXELRXAHPDVEKNATALREKLQAXVQNTVQESQKLAKKVSSNVQETNE 534
++ Q+IE T L D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 535 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 618
L+ K + DD+ +EV+ K++ A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -1
Query: 165 SMSLKKSGASRRTIAALGQSDAGEENYELGGH----DVLSR--D*VRREMRTGLQQQRSV 4
S +L + ++R AAL + + + NY +G + +VLS D RRE LQ+ S+
Sbjct: 348 SQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREKEALLQELESL 407
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 502 KVSSNVQET--NEKLAPKIKAAYD 567
+V N++ET EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 343 AKEALEQSRQNIERTAX-ELRXAHPDVEKNATALRE 447
A E +++ +IER+A + A + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = +1
Query: 421 EKNATALREKLQAXVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIK 600
EK + +EK A ++QE + ++ SNV+ +N +L ++ + +++ +
Sbjct: 83 EKKIKSKQEKEIAHALQSIQERELRERQQMSNVEASNAQLLTNQRSMQTEISESLLHLAS 142
Query: 601 KIQEAA 618
++E A
Sbjct: 143 VLKENA 148
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/84 (23%), Positives = 39/84 (46%)
Frame = +1
Query: 340 KAKEALEQSRQNIERTAXELRXAHPDVEKNATALREKLQAXVQNTVQESQKLAKKVSSNV 519
KAKE ++ R +RTA E+R +E+ R + A Q + Q +++ +
Sbjct: 164 KAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQ-----LANIL 218
Query: 520 QETNEKLAPKIKAAYDDFAKNTQE 591
+ + + L +I+ A + + T E
Sbjct: 219 KHSTDLLEARIERANINISAQTSE 242
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 397 LRXAHPDVEKNATALREKLQAXVQNTVQE 483
L AH D+E T++RE+L++ + +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 449 FSRRAVAFFSTSGWALRSSSAVRSMF 372
FSR V FFS AL+S S + +MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 9.5
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +1
Query: 328 DANGKAKEALEQSRQNIERTAXELRXAHPDVEKNATALREKLQAXVQNTVQESQK-LAKK 504
D+ KAK LEQ+R +ERT E A A+ L+ + ++ +V + +K L +K
Sbjct: 403 DSIKKAKTELEQARIELERTQREGNYA------RASELQYAIIPELERSVPKEEKTLEEK 456
Query: 505 VSSNVQE--TNEKLAPKIKAA 561
S V + T++ +A + A
Sbjct: 457 KPSMVHDSVTSDDIAVVVSRA 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,261
Number of Sequences: 5004
Number of extensions: 25785
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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