Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F03
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 58 8e-10
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 57 3e-09
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 5e-08
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 52 7e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 51 1e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 51 2e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 2e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 50 2e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 50 3e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 4e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 3e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 46 4e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 2e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 4e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 5e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.001
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 38 0.002
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.007
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.007
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.012
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.021
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.083
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 32 0.083
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.11
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.15
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 28 1.0
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.8
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 4.1
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 26 4.1
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 4.1
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 26 5.5
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 358
V NL++ TT E + +F +CGE+ I + DR+T+ GF FV +FE +DA ++L +
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISR 95
Query: 359 RMLDGRELRVQM 394
LD R +R +
Sbjct: 96 TSLDERIIRADL 107
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = +2
Query: 158 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 337
D +L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFAFV +++R A +
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258
Query: 338 ALDTMDG 358
A D +DG
Sbjct: 259 ARDRLDG 265
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 52.4 bits (120), Expect = 5e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 349
S+ V N+ Y TPE+L+ F CG V + I D++T +GFA++ F E AL
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-L 114
Query: 350 MDGRMLDGRELRV 388
++G ML R L+V
Sbjct: 115 LNGSMLHERPLKV 127
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 52.0 bits (119), Expect = 7e-08
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR----GFAFVRFFERRDAEEALD 346
V L+ T ++R +FE G V + IP R R +R G AFV F + D ++A++
Sbjct: 48 VGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIE 107
Query: 347 TMDGRMLDGRELRVQMA 397
T++G+ LD RE+ VQ A
Sbjct: 108 TLNGKTLDDREIVVQKA 124
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 281 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 397
R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 352
L V N+ + T ED++ +FE G++ +++ RD R S+GF ++++ A AL+ M
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKM 400
Query: 353 DGRMLDGRELRV 388
+G L GR +RV
Sbjct: 401 NGFDLAGRNMRV 412
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 358
V L R T +L FE+ G V D I RD+ + S+G A+V F D+ +A + G
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFC-HEDSVQAAIALSG 302
Query: 359 RMLDGRELRVQM 394
+ L G + VQ+
Sbjct: 303 KRLLGLPVIVQL 314
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 185 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 364
NLTY +DL+ +F G++ +++P D+ T +GFA++ F + DA A +D +
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388
Query: 365 LDGRELRV 388
GR L V
Sbjct: 389 FQGRLLHV 396
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 358
+ NL + T +D++ + G++ + +P+ ++ R +RGFAF F R+A A+ +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEFVTAREAANAMRALKN 783
Query: 359 RMLDGRELRVQMA 397
L GR L +Q A
Sbjct: 784 THLLGRHLVLQYA 796
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRRVFERC-GEVGDIYIPRDRYTRE----SRGFAFVRFFERRDAE 334
++ V NL + T E+ ++VF+ G + + + R S GF FV F ++ A
Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679
Query: 335 EALDTMDGRMLDGRELRVQMA 397
A+ M+G +LDG +L ++++
Sbjct: 680 AAMHAMNGFVLDGHKLEIKLS 700
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 242 EVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 397
E+ D+ + + + SR FAF+ F DA++A+ ++ ++ + V A
Sbjct: 31 EITDVSVAKTK-EGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRA 81
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%)
Frame = +2
Query: 131 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 310
S P P+ D + V NL + E L R F CG + + I RD T +GFA+++
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 311 FFERRDAEEALDTMDGRMLDGRELRVQMA 397
F + ++AL + +M +GR LR+ A
Sbjct: 318 FKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 50.4 bits (115), Expect = 2e-07
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +2
Query: 158 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 337
D ++ + L+Y T D+ R F R G + I + R++ T +S G+AFV F RD +
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKV 156
Query: 338 ALDTMDGRMLDGRELRVQM 394
A G ML+GR + V +
Sbjct: 157 AYKASAGLMLNGRRIVVDV 175
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 349
SL V L T L +F G V I + RD TR S G+A+V F D E+ALD
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 350 MDGRMLDGRELRV 388
++ ++ GR R+
Sbjct: 141 LNYTLIKGRPCRI 153
Score = 38.7 bits (86), Expect = 7e-04
Identities = 25/77 (32%), Positives = 38/77 (49%)
Frame = +2
Query: 167 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 346
V+L + NL E L+ F G + I D + S+GF FV + +A +A+
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVT 422
Query: 347 TMDGRMLDGRELRVQMA 397
M+ RML G+ L V +A
Sbjct: 423 EMNQRMLAGKPLYVALA 439
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 352
L V + R ++L+++F + G V + I R+ T+ SRGF F+ F +A A+D +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 353 DGRMLDGRELRVQMA 397
+ + GR L VQ A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 358
V NL++ T +DL F CG++ I +P D + +GF +V F + A++ ++ M+G
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428
Query: 359 RMLDGRELRVQMA 397
+ GR R+ +
Sbjct: 429 HFIAGRPCRLDFS 441
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 358
V L++ + L + FE G + + D + S+G+ +V F A+ A+
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
Query: 359 RMLDGRELRVQMA 397
+ +DGR + + ++
Sbjct: 327 KEIDGRMVNLDLS 339
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 358
+ NL + +D+ VF GE DI + RD+ T +S+GFAF+++ ++R A+D M
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTN 94
Query: 359 RMLDGRELRV 388
L R +RV
Sbjct: 95 VKLLDRLVRV 104
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 349
+L V NL ++T +DL F G + + + T E+RG+ FV F DA+ A
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 350 MDGRMLDGRELRVQMA 397
+ + L GR LR+ A
Sbjct: 66 LKNKKLHGRILRLDFA 81
Score = 45.6 bits (103), Expect = 6e-06
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 152 RIDGMVSLKVDNLTYRTT-PEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 328
R D L + NL + P+ L F + G+V +I IP R GFAFV +R+
Sbjct: 102 RQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKA 160
Query: 329 AEEALDTMDGRMLDGRELRVQMA 397
AEEA+++++G +DGR + V A
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 143 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFER 322
P R DG + + L + TT + LR FE+ GEV D + RD T SRGF F+ F
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Query: 323 RDAEEALDT---MDGRMLD 370
+ E + +DG+++D
Sbjct: 215 KCVNEVMSKEHHLDGKIID 233
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 349
++ + NL + T L + + G V +I+IPRDR GF F F +D E A
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 350 MDGRMLDGRELRVQMA 397
++ L G+ +RV A
Sbjct: 72 LNQVKLFGKPIRVNRA 87
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 200 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 379
T EDL +F R G++ + RD+ T +S +AF+ F + E+A M ++D
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314
Query: 380 LRVQMA 397
+ V +
Sbjct: 315 IHVDFS 320
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 251 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 397
DI IPR TR SR FAFV + + RDAE+A + GR L+ G LRV+ A
Sbjct: 37 DIPIPR---TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 346
S+ V +L+ D+ +F R I D T SRG+ FVRF + D + AL
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 347 TMDGRMLDGRELRVQMA 397
M G++ R +RV +A
Sbjct: 247 EMQGQICGDRPIRVGLA 263
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 158 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 313
D V L V NL ++ E L+ F+R G+V + IP D+ + +G+AFV F
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 352
L V N+ ++ +D+ F G+V + IP+ R+ + +GF +V +DAE AL
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RF-NQHKGFGYVVMTTNQDAENALSAA 816
Query: 353 DGRMLDGRELRVQMA 397
G+ L R L V ++
Sbjct: 817 -GKQLGNRVLNVVLS 830
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 209 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 376
+D+ E+CG V ++ + Y +E G VRF +AE + M GR DGR
Sbjct: 274 DDITEEAEKCGRVTNVVL----YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +2
Query: 140 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 319
RP ++G + + V + T E + +F G V ++++ DR T +G+A + +
Sbjct: 2 RPAKSVEGYIII-VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYAT 60
Query: 320 RRDAEEALDTMDGRMLDGRELRVQMA 397
A++A+D + +LD +L V A
Sbjct: 61 LEQAQKAVDEKNLSLLD-EKLEVDFA 85
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 143 PPPRIDGMVS--LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 316
PP ++ V+ L + NL+++ T E++ +F R G V I + T ++RG AFV +
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGN---TVQTRGTAFVVYE 58
Query: 317 ERRDAEEALDTMDG 358
+DA A + + G
Sbjct: 59 NVQDARRACEKLSG 72
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 158 DGMVSLKVDNLTYRTTPEDL----RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 325
D S+ V +L T DL R ++ C I P T SR + FVRF +
Sbjct: 179 DPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDP---VTGLSRKYGFVRFSSEK 235
Query: 326 DAEEALDTMDGRMLDGRELRVQMA 397
+ + AL M G + GR LR+ +A
Sbjct: 236 EQQHALMHMQGYLCQGRPLRISVA 259
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +2
Query: 155 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 334
+D + + NL + + + + G++ + ++ S+GF F F DAE
Sbjct: 306 LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
Query: 335 EALDTMDGRMLDGRELRVQMA 397
A+ +DG+ G +L Q A
Sbjct: 366 VAISGLDGKDTYGNKLHAQFA 386
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.021
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 290 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 391
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.9 bits (69), Expect = 0.083
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 313
L V NL + TT DL+ F + G++ + + T + +GF FV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.9 bits (69), Expect = 0.083
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 352
L V L + + +R F + G V + + R+R T S+ +AF+ F A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 353 DGRMLDGRELRVQM 394
+L G+ L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +2
Query: 179 VDNLTYRTTPEDLRRVFER----CGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 346
V NL T ++ +F + C V Y P R S+G A + F DA A +
Sbjct: 59 VSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGR----SKGIATIIFSRPGDATRAYE 114
Query: 347 TMDGRMLDG-RELRVQM 394
+GR++DG R+++V++
Sbjct: 115 QYEGRLVDGTRKMKVEI 131
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 31.1 bits (67), Expect = 0.15
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +2
Query: 170 SLKVDNLTYRTTPEDLRR----VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 337
+L V+NL + DLR +F G V DI + T + RG A V FF+ A
Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAI 61
Query: 338 ALDTMDGRMLDGRELRVQMA 397
A+ + + G+E+++Q A
Sbjct: 62 AMKALKNFIFFGKEMKIQYA 81
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 227 FERCGEVGDIYIPRDRYTRESRGFA--FVRFFERRDAEEALDTMDGRMLDGRELR 385
F + G++ I I + + G ++ + + DA A+ +DG + DGR LR
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 311 FFERRDAEEALDTMDGRMLDGRELRV 388
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 352
L V NL E L + F + + RDR + +RGF FV F + +A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK-TRGFGFVSFKDSDQFLKAWREK 90
Query: 353 DGRMLDGRELRVQMA 397
+G+ + R +++ A
Sbjct: 91 NGKYIGSRPVKLSRA 105
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.4
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 170 SLKVDNL--TYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 343
+L V NL T T L +F G + + + S+G+ FV F + A A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 344 DTMDGRMLDGRELRVQMA 397
DT++G M+ + + V A
Sbjct: 443 DTLNGMMVGKKRIFVCFA 460
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 506 NGCGYDCASNYDGGNETWTCACD 438
+GC + Y+GG +TW C+ D
Sbjct: 89 DGCNDLVPNVYEGGYKTWECSLD 111
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 209 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 388
ED+ F + GEV + + D G +VRF A+ A+D ++ R R +
Sbjct: 78 EDMFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136
Query: 389 QMA 397
+++
Sbjct: 137 ELS 139
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +2
Query: 173 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 352
L V + + T ED+ F+ G++ D + GF FV + RDA + ++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIVNDF 57
Query: 353 DGRMLDGRELRVQMA 397
G+ G + V+ A
Sbjct: 58 QGKEFMGSRIVVEPA 72
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 200 TTPEDLRRVFER-CGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 376
T +D+ + R E GDI R SRG AF+ + +A+ A + M + LD
Sbjct: 182 TPTDDIEEIVSRHFAEWGDIERIR---VLNSRGIAFITYLNEANAQFAKEAMAHQSLDHD 238
Query: 377 E-LRVQMA 397
E L V+ A
Sbjct: 239 ECLNVRWA 246
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +2
Query: 155 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 334
I G ++ ++NL T+ +D+ GE+ + + + + A VRF A+
Sbjct: 96 IAGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDS----QGKVRASVRFSTLASAQ 151
Query: 335 EALDTMDGRMLDGREL 382
+ + +DG DG +L
Sbjct: 152 QVVQKLDGVTADGFKL 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,728
Number of Sequences: 5004
Number of extensions: 38650
Number of successful extensions: 156
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -