Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_F01
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 81 6e-16
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 73 2e-13
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 66 2e-11
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 31 0.80
08_01_0265 + 2148255-2150219,2150735-2150812 31 0.80
05_07_0284 - 28943527-28943625,28944417-28944785 30 1.4
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 30 1.4
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 3.2
01_06_1524 - 37980345-37980587,37980671-37980845,37980938-379810... 29 4.3
08_02_0890 + 22309061-22309086,22309172-22309253,22309349-223094... 28 7.5
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 81.4 bits (192), Expect = 6e-16
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +1
Query: 253 VEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEF 429
V IF NRSL++ N+ GFDMDYTLA+YK +E L ++ T E+LV GYP E+L +
Sbjct: 79 VGKEIFCNRSLNMRNITAVGFDMDYTLAQYKPETFEALAYHGTIEKLVKDLGYPEELLTW 138
Query: 430 EYDPSFPVRGLWFDTXYGNLLK 495
++D + VRGL D GN+LK
Sbjct: 139 QFDWKYMVRGLVLDKKRGNILK 160
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +1
Query: 265 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDP 441
I+VN+++ L++++ YGFD DYTL+ Y S + L ++L K+ LV + YP L++EYD
Sbjct: 81 IYVNKNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYEYDH 139
Query: 442 SFPVRGLWFDTXYGNLLK 495
FP+RGL++D G LLK
Sbjct: 140 GFPIRGLYYDRLKGCLLK 157
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = +1
Query: 262 RIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 441
+IF +R++++E++K GF M+YTL YK +E L + K+RLV YP +ILE+ Y+
Sbjct: 381 QIFCSRTVNMEDIKAIGFKMEYTLINYKVT-FENLAYVEAKKRLVNGKYPEKILEWNYNS 439
Query: 442 SFPVRGLWFDTXYGNLLK 495
+RGL D GN++K
Sbjct: 440 EHMIRGLIIDKKKGNIIK 457
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 591 VSGIYSDIIRIPVNVLKIQIH----VHTLXYSRRHRLEQISIXRIKPETSHWKRRVIFEF 424
V GI+S ++ N LKIQ+H +H Y R+ + RIK + H +IF
Sbjct: 3644 VLGIWSPVLSAVGNALKIQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHLIFSV 3703
Query: 423 *YL 415
+L
Sbjct: 3704 DFL 3706
>08_01_0265 + 2148255-2150219,2150735-2150812
Length = 680
Score = 31.1 bits (67), Expect = 0.80
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 127 KINNY-QRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYY---RRVEHRIFVNRSLHLE 294
KINNY + LN+ NS + +V K L + I + + R+ +HR F SLH +
Sbjct: 520 KINNYVELLNLYINSGRQTEVSKVVNTLKRRGLCIHAACSWITVRKKDHRFFFKDSLHPQ 579
Query: 295 NVKFYGFDMDYTLAEYKSPQY 357
+ + Y +D L E K Y
Sbjct: 580 SSEIYR-KLDSLLKEIKQLGY 599
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 473 VSNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNPNVSYCGDLY 339
+ + PL G +G Y N + +P T + S + NP ++ ++Y
Sbjct: 111 LDRRSPLRGVQGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 403 GYPREILEFEYDPSFPVRGLWFDTXYGNLLKS 498
G+P + LEF DP +RGL D GNL+K+
Sbjct: 51 GFPVDDLEF--DPDLVIRGLIMDKDKGNLVKA 80
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 277 RSLHLENVKFYGFDMDYTLAEYKSPQYETLG 369
R LHLE+V+F G DYTL + P E LG
Sbjct: 300 RELHLEHVRFNG---DYTLDDAMLPLLEYLG 327
>01_06_1524 -
37980345-37980587,37980671-37980845,37980938-37981001,
37981080-37981194,37982262-37982406,37984671-37984981
Length = 350
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 193 ENECLTLQDKNIMSKKYYRRV-EHRIFVNRSLHLENVKFYGFDMDYTLAEYKS 348
+NE ++DK++ +K RR +++I + + K D+DYTL +++S
Sbjct: 128 QNEVTAIKDKDVYKQKLKRRASQYKIKILNPCR-KGKKLLVLDIDYTLFDHRS 179
>08_02_0890 +
22309061-22309086,22309172-22309253,22309349-22309441,
22309526-22309720
Length = 131
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +1
Query: 340 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRGLWFD 471
YK P L E L V G R EF Y PS P WFD
Sbjct: 38 YKQPNLSNLCGYYVCEMLRVCGRYRT--EFTYLPSIPYNASWFD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,658
Number of Sequences: 37544
Number of extensions: 292861
Number of successful extensions: 564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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