Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F01
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  60   2e-09
SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)            46   4e-05
SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.067
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     31   0.62 
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
 Frame = +1

Query: 211 LQDKNIMSKKYYRRV--EHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTK 384
           ++ K+ + + Y   V  +  IF N  L L+ +  YGFD DYTLA Y +  +  +      
Sbjct: 47  IERKHSIEENYEHTVVQDQGIFANNELSLKYINVYGFDYDYTLASYSNTLHFLIYDLAVG 106

Query: 385 ERLVVKGYPREILEFEYDPSFPVRGLWFDTXYG 483
             L   GYP+ +   +Y+P F VRGL +DT  G
Sbjct: 107 NLLSFFGYPKGVEGMKYNPEFAVRGLHYDTVNG 139


>SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)
          Length = 172

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +1

Query: 412 REILEFEYDPSFPVRGLWFDTXYGNLLKSMPTG-IX*CVY 528
           +++L F+YDP FPVRGL+FD   GNLLK    G I  CV+
Sbjct: 18  QDLLSFQYDPIFPVRGLFFDCELGNLLKVDTYGNILSCVH 57



 Score = 34.7 bits (76), Expect = 0.067
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 492 QVDAYGNXLVCVHGFEFL 545
           +VD YGN L CVHGF+FL
Sbjct: 45  KVDTYGNILSCVHGFDFL 62


>SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 492 QVDAYGNXLVCVHGFEFL 545
           +VD YGN L CVHGF+FL
Sbjct: 67  KVDTYGNILSCVHGFDFL 84


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 205 LTLQDKNIMSKKYYRRVEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTK 384
           L L D  I  K+++R  +    V R+LH+   +F  +D D    +Y    Y T  F +T+
Sbjct: 386 LELSDHEI--KEWFRPRD--FMVGRTLHIMGRRFLLYDCD----QYTKDFYRT-NFGVTE 436

Query: 385 ERLV-VKGYPREILE 426
              V VKG PRE+LE
Sbjct: 437 FPAVDVKGAPRELLE 451


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 241  YYRRVEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREI 420
            +Y      +F  R +H   + F+G  + +T  + KS Q  +L   ++K  +    +PR +
Sbjct: 1530 WYGENRKPVFEKRGMHPFGMAFFGDKLYWTDYKTKSVQELSLSSGVSKPFVRRLSFPRGL 1589

Query: 421  LEFEYDPS 444
              + YDPS
Sbjct: 1590 --YVYDPS 1595


>SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 151 NIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHRIFV 273
           N++ +    M +C E+ C+  +DK+IM ++ + R + RI+V
Sbjct: 44  NLLKSPASSMKICYEDICI--KDKDIMLEQIHLRDQDRIYV 82


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 117 YSTSEHALFLLSTVPLANIWNKIFTILGYHLP 22
           YSTS+  L LL  V   N W + F + G  LP
Sbjct: 84  YSTSQERLTLLVDVDGKNEWRECFDVGGVKLP 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,460,436
Number of Sequences: 59808
Number of extensions: 396176
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)