Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F01
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.5  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    24   1.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 537 EFLKHSQVYELYPNKF 584
           +++K   +YE+YPN F
Sbjct: 155 KYMKFPAIYEIYPNYF 170


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 537 EFLKHSQVYELYPNKF 584
           +++K   +YE+YPN F
Sbjct: 155 KYMKFPAIYEIYPNYF 170


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -2

Query: 491 SKFPYXVSNQRPLTGN---EGSYSNSNISLGYPLTTNLSLVKL--NPNVSYCGD 345
           SK P  +SN  PL+ N     +Y+N N      L  N++ ++    P   YCG+
Sbjct: 76  SKEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 170 NLKWMFVRKTSA*LFKIKILCPRNTIVVLNTEFSLT 277
           N KW F    +  + K+   CP +T  ++  EFS++
Sbjct: 214 NSKWDFKVIKATKVLKMYACCPNDTYPMIVYEFSIS 249


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 592 SLRNLFGYNSYTCECFKNSNPC 527
           S     G ++   EC K SNPC
Sbjct: 86  SCNKCIGCSAEKFECSKTSNPC 107


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 483 KFAQVDAYGNXLVCVHGFEFLKHSQVYEL 569
           K  Q + Y N L       FLKHS + ++
Sbjct: 94  KIIQTEKYSNMLNSEKHASFLKHSNIVKV 122


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 340 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFP 450
           Y +PQ + L     +++    GY   +    YDP  P
Sbjct: 110 YGNPQQQQLAAETQQQQQHNNGYASPMSTSSYDPYSP 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,031
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)