Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_F01
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75210.1 68414.m08737 5' nucleotidase family protein contains...    85   3e-17
At2g23890.1 68415.m02853 5' nucleotidase family protein contains...    81   8e-16
At5g48960.1 68418.m06057 5' nucleotidase family protein low simi...    59   2e-09
At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam ...    29   2.0  
At2g02890.1 68415.m00239 F-box family protein contains Pfam PF00...    29   2.0  
At2g02660.1 68415.m00205 hypothetical protein                          28   4.7  
At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ...    28   6.2  
At1g02110.1 68414.m00137 proline-rich family protein contains pr...    28   6.2  
At4g14380.1 68417.m02215 expressed protein                             27   8.2  
At2g23700.1 68415.m02830 expressed protein contains Pfam profile...    27   8.2  

>At1g75210.1 68414.m08737 5' nucleotidase family protein contains
           Pfam profile: PF05761 5' nucleotidase family
          Length = 642

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 40/82 (48%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
 Frame = +1

Query: 253 VEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEF 429
           + ++IF NRSL+++N+   GFDMDYTLA+YKS  +E+L ++ T  +LV   GYP E+LE+
Sbjct: 145 ISNQIFCNRSLNMKNIIAVGFDMDYTLAQYKSETFESLAYDGTVRKLVYDLGYPNELLEW 204

Query: 430 EYDPSFPVRGLWFDTXYGNLLK 495
            +D ++ VRGL  D   GN+LK
Sbjct: 205 TFDWNYMVRGLVLDKKRGNILK 226


>At2g23890.1 68415.m02853 5' nucleotidase family protein contains
           Pfam PF05761: 5' nucleotidase family; similar to
           Cytosolic purine 5'-nucleotidase (EC 3.1.3.5)
           (5'-nucleotidase cytosolic II) (Swiss-Prot:P49902) [Homo
           sapiens]
          Length = 553

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +1

Query: 265 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDP 441
           I+VN++L L+N++ YGFD DYTLA Y S   ++L ++L K+ +V +  YP    +FEYDP
Sbjct: 99  IYVNKNLRLDNIQVYGFDYDYTLAHYSS-HLQSLIYDLAKKHMVNEFRYPDVCTQFEYDP 157

Query: 442 SFPVRGLWFDTXYGNLLK 495
           +FP+RGL++D   G L+K
Sbjct: 158 TFPIRGLYYDKLKGCLMK 175


>At5g48960.1 68418.m06057 5' nucleotidase family protein low
           similarity to SP|P49902 Cytosolic purine 5'-nucleotidase
           (EC 3.1.3.5) (5'-nucleotidase cytosolic II) {Homo
           sapiens}; contains Pfam profile PF05761: 5' nucleotidase
           family
          Length = 642

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +1

Query: 265 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPS 444
           IF +R+L+L ++   G+DMDYTL  Y    +E   ++   E L   G+P + L F  DP 
Sbjct: 165 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGKAYDYCMENLKSMGFPVDGLAF--DPE 222

Query: 445 FPVRGLWFDTXYGNLLKS 498
             +RGL  D   GNL+K+
Sbjct: 223 LVIRGLMIDKEKGNLVKA 240


>At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam
           domian PF00240: Ubiquitin family
          Length = 340

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 193 ENECLTLQDKNIMSKKYYRRVEHRIFVNRSLHLENVKFYGFDMDYTLAEYKS 348
           + E + ++DK +  +K  RR++      R+   +  K    D+DYTL +++S
Sbjct: 120 KEEAVDVKDKEVNKQKLRRRIDQYKINLRTPCRQGKKLLVLDIDYTLFDHRS 171


>At2g02890.1 68415.m00239 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 531

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +1

Query: 202 CLTLQDKNIMSKKYYRRV-EHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNL 378
           C++ Q  ++ +  Y++++ + R     SL L  +  YG + DY++  + SPQ E   +  
Sbjct: 168 CVSKQCASMFASPYFKKLFQTRSSAKPSL-LFAIADYGIEEDYSMKFFSSPQLENT-YEK 225

Query: 379 TKERLVVKGYPREILEFEYDPSFPV 453
           T   LV        ++F  D S P+
Sbjct: 226 TSSTLVAAA--EFHVKFSPDKSIPI 248


>At2g02660.1 68415.m00205 hypothetical protein
          Length = 421

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 202 CLTLQDKNIMSKKYYRRV-EHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYE 360
           C++ Q  ++ +  Y+R++ + R     SL L  +  YG + DY++  + SPQ E
Sbjct: 14  CVSKQWASMFASPYFRKLFQTRSSAKPSL-LFAIADYGIEEDYSMKFFSSPQLE 66


>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
           identical to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana], missing 200 aa at
           N-terminus
          Length = 772

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 534 FEFLKHSQVYELYPNKFLRL*MNRGFTF 617
           +E  KH +V  ++PNK L+L   R + F
Sbjct: 96  YEISKHPEVVSVFPNKALKLHTTRSWDF 123


>At1g02110.1 68414.m00137 proline-rich family protein contains
           proline-rich domain, INTERPRO:IPR000694
          Length = 679

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 138 IVYFQKIYSTSEHALFLLSTVPLAN 64
           I+ FQ+ +  S HA F LS VPL+N
Sbjct: 486 IIKFQREFICSLHAWFKLSLVPLSN 510


>At4g14380.1 68417.m02215 expressed protein
          Length = 200

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +1

Query: 211 LQDKNIMSKKYYRRVEHRI----FVNRSLHLENVKFYGFDMDYT-LAEYKSPQYETLGFN 375
           LQ+ +   K YY R +       F++RSL     + YG+D +Y+ + +Y+S Q    G +
Sbjct: 61  LQNNSYTDKYYYSRNQSSRQFLNFISRSLTKPKRRQYGYDDEYSQIYQYQS-QSRGEGTS 119

Query: 376 LTKERLVVKGYPREILEFEYDPSFP 450
            +KE +V +   ++  E E +   P
Sbjct: 120 GSKENVVRRIEEQKEEEEEEEEGMP 144


>At2g23700.1 68415.m02830 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 707

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 375 IES*CFVLWRFVFGQCIVHIKTVKFNIF*MQRSVNENSVFNTTIVFLGHNIFILKSQAL 199
           I+S CF     +  QC +  + +   +   Q S+N+ S FN  I     ++F   SQ L
Sbjct: 297 IDSRCFSFDNRLKDQCFIEKEDIDSCVRRCQSSLNQRSTFNNRISPPEDSVFACHSQPL 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,940
Number of Sequences: 28952
Number of extensions: 273142
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)