Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E21
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.62 
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                 28   7.6  
SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                  28   7.6  

>SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 652 RPVMTYASVVFAHAARIHLKSLQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISK 485
           +P+M Y   V+      H  ++ ++Q R  RI     W+  ++ L ++L++E  +K
Sbjct: 8   QPLMDYCITVWGDNLIEHDNTILLLQKRAARIIAYKKWYDHSMALFEELNIEPFTK 63


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 652 RPVMTYASVVFAHAARIHLKSLQIIQSRFCRI 557
           R V+ YASVVFA+  +    SL+ IQ R  RI
Sbjct: 716 RSVIEYASVVFANLPQYLANSLEAIQKRALRI 747


>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 541

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 652 RPVMTYASVVFAHAARIHLKSLQIIQSRFCRI 557
           R V+ YASVVFA+  +     L+ IQ R  RI
Sbjct: 434 RSVIEYASVVFANLPQYLANYLEAIQKRALRI 465


>SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 247 LLVEPFVASDGFDENGDRCLKYLKAPLVDQEDPR*RV 357
           LLV  F+A   + E+ +RCLK ++A   +   P  R+
Sbjct: 93  LLVAAFIAGSSYAESLERCLKEIQAAKKELRCPECRI 129


>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 476

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 652 RPVMTYASVVFAHAARIHLKSLQIIQSRFCRI 557
           R V+ YASVVFA+  +     L+ IQ R  RI
Sbjct: 369 RSVIEYASVVFANLPQYLANYLEAIQKRALRI 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,159
Number of Sequences: 59808
Number of extensions: 323979
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)