Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E21
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050629-1|AAH50629.1|  561|Homo sapiens cytoplasmic polyadenyla...    30   8.3  
BC035348-1|AAH35348.1|  486|Homo sapiens cytoplasmic polyadenyla...    30   8.3  
AK023265-1|BAB14496.1|  486|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AF329403-1|AAK01240.1|  491|Homo sapiens cytoplasmic polyadenyla...    30   8.3  
AF329402-1|AAK01239.1|  566|Homo sapiens cytoplasmic polyadenyla...    30   8.3  

>BC050629-1|AAH50629.1|  561|Homo sapiens cytoplasmic
           polyadenylation element binding protein 1 protein.
          Length = 561

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 517 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSR 368
           HD L  + +S+Y    S R          P ++A  N++  P+ R++ SR
Sbjct: 376 HDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSR 425


>BC035348-1|AAH35348.1|  486|Homo sapiens cytoplasmic
           polyadenylation element binding protein 1 protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 517 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSR 368
           HD L  + +S+Y    S R          P ++A  N++  P+ R++ SR
Sbjct: 301 HDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSR 350


>AK023265-1|BAB14496.1|  486|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13203 fis, clone NT2RP3004504, highly similar to
           M.musculus mRNA for CPEB protein. ).
          Length = 486

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 517 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSR 368
           HD L  + +S+Y    S R          P ++A  N++  P+ R++ SR
Sbjct: 301 HDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSR 350


>AF329403-1|AAK01240.1|  491|Homo sapiens cytoplasmic
           polyadenylation element-binding protein short form
           protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 517 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSR 368
           HD L  + +S+Y    S R          P ++A  N++  P+ R++ SR
Sbjct: 306 HDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSR 355


>AF329402-1|AAK01239.1|  566|Homo sapiens cytoplasmic
           polyadenylation element-binding protein long form
           protein.
          Length = 566

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 517 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSR 368
           HD L  + +S+Y    S R          P ++A  N++  P+ R++ SR
Sbjct: 381 HDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSR 430


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,786,517
Number of Sequences: 237096
Number of extensions: 1562304
Number of successful extensions: 7279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7279
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)