Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_E12
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0479 + 14529783-14530613 33 0.26
03_06_0444 - 33979319-33980044 30 1.4
07_03_1629 - 28246440-28247339 29 3.2
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 29 4.2
04_03_0960 - 21257219-21257953 29 4.2
02_04_0025 - 19006493-19007040,19007665-19007899 28 5.6
02_04_0452 + 23044190-23045227 28 7.4
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 9.7
02_04_0168 - 20518522-20518970,20519069-20519270 27 9.7
02_04_0167 - 20510507-20510955,20511058-20511262 27 9.7
>05_03_0479 + 14529783-14530613
Length = 276
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 178 MACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
MA RR +RRR WGR R P +R WL
Sbjct: 87 MAASRRFRGVRRRPWGRFSAEIRDPSLQKRLWL 119
>03_06_0444 - 33979319-33980044
Length = 241
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 214 VKVKLIFAXPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
VK +++ A G R +R+R WGR R P RR WL
Sbjct: 64 VKRRVMEAGAGEARPTARFRGVRQRPWGRFAAEIRDPHLRRRLWL 108
>07_03_1629 - 28246440-28247339
Length = 299
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 169 PRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
P R +RRR WGR R P R WL
Sbjct: 36 PGRFLGVRRRPWGRYAAEIRDPTTKERHWL 65
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 184 GSMACPRRACHLRRRSWGRMCKRH 113
G C R H+R W R CK+H
Sbjct: 140 GPYHCRREGLHVRSNQWKRDCKKH 163
>04_03_0960 - 21257219-21257953
Length = 244
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 193 AXPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
A G++ R+ +RRR WG+ R P R WL
Sbjct: 52 ARQGAVPAARKYRGVRRRPWGKWAAEIRDPHRAARVWL 89
>02_04_0025 - 19006493-19007040,19007665-19007899
Length = 260
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 184 GSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
G+ A R +RRR WG+ R P R WL
Sbjct: 79 GAAAAERHYRGVRRRPWGKWAAEIRDPNKAARVWL 113
>02_04_0452 + 23044190-23045227
Length = 345
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 151 LRRRSWGRMCKRHRTPPCLRRTWL 80
+RRR WGR R P R WL
Sbjct: 62 VRRRPWGRFAAEIRDPASKERRWL 85
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 120 LHMRPQLRLRRWQALRGQAMLPGXAKI--NLTLTLIFHFDNEE 242
L++ +L + A++ A+ P KI N LTL+ HF N E
Sbjct: 1659 LYVAGKLNVMGPYAVKSSAVFPNCCKIENNSRLTLVCHFQNNE 1701
>02_04_0168 - 20518522-20518970,20519069-20519270
Length = 216
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 175 ACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
A RR +RRR WG+ R P R WL
Sbjct: 88 ATARRYRGVRRRPWGKWAAEIRDPRKAARVWL 119
>02_04_0167 - 20510507-20510955,20511058-20511262
Length = 217
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 175 ACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 80
A RR +RRR WG+ R P R WL
Sbjct: 91 ATARRYRGVRRRPWGKWAAEIRDPRKAARVWL 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,444
Number of Sequences: 37544
Number of extensions: 157207
Number of successful extensions: 412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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