Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E10
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   150   1e-37
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    92   6e-20
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    79   4e-16
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.2  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   9.5  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  150 bits (364), Expect = 1e-37
 Identities = 66/102 (64%), Positives = 80/102 (78%)
 Frame = +3

Query: 81  ETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVA 260
           + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGWDEGV 
Sbjct: 6   QVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVP 65

Query: 261 KMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 386
           KMS+GE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 66  KMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 46/89 (51%), Positives = 59/89 (66%)
 Frame = +3

Query: 120 SGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCS 299
           +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T  
Sbjct: 274 NGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIP 332

Query: 300 PDYAYGQQGHPGVIPPNSTLIFDVELLRL 386
              AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 333 APMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 42/88 (47%), Positives = 52/88 (59%)
 Frame = +3

Query: 117 KSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 296
           K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD G+  M VG    +  
Sbjct: 274 KRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHI 332

Query: 297 SPDYAYGQQGHPGVIPPNSTLIFDVELL 380
               AYG +  PG IP NS L+FDV+LL
Sbjct: 333 PAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 304 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 173
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 195 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 314
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,686
Number of Sequences: 5004
Number of extensions: 56873
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)