Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_E09
(459 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 59 4e-08
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 50 3e-05
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 46 4e-04
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 45 7e-04
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 43 0.004
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 41 0.015
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 40 0.026
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 38 0.14
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 37 0.24
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 35 0.97
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 34 1.3
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 34 1.3
UniRef50_Q4FPU6 Cluster: ABC efflux transporter, fused inner mem... 33 2.2
UniRef50_A0DRX9 Cluster: Chromosome undetermined scaffold_61, wh... 33 3.0
UniRef50_A7IXQ7 Cluster: Putative uncharacterized protein b732L;... 33 3.9
UniRef50_Q76K51 Cluster: O-acetyl-L-homoserine sulfhydrylase; n=... 33 3.9
UniRef50_Q4JUB6 Cluster: Putative transcriptional regulator; n=1... 32 5.2
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 32 5.2
UniRef50_UPI0000F2E808 Cluster: PREDICTED: hypothetical protein;... 32 6.8
UniRef50_A7AQA8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.8
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 31 9.0
UniRef50_Q55BQ3 Cluster: SCY1 family protein kinase; n=1; Dictyo... 31 9.0
UniRef50_A2SQ20 Cluster: Putative uncharacterized protein; n=1; ... 31 9.0
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 59.3 bits (137), Expect = 4e-08
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 3.9
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 49.6 bits (113), Expect = 3e-05
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 226
R TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23 RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
Score = 32.3 bits (70), Expect = 5.2
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +1
Query: 79 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
P LA+V+KVLGRTGS+G V ++ RV + D S
Sbjct: 7 PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 46.0 bits (104), Expect = 4e-04
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
R Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 20 RGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 45.2 bits (102), Expect = 7e-04
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPV 208
QCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 26 QCTQVRVKFMDDTSRSIIRNVKGPV 50
Score = 32.3 bits (70), Expect = 5.2
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQG 132
+P LARV KVLGRTGSQG
Sbjct: 7 QPIKLARVTKVLGRTGSQG 25
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 42.7 bits (96), Expect = 0.004
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +2
Query: 77 NPTFLLVS*KCLAVLVLRXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 226
N F++V+ K L + R Q TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 7 NSEFVIVT-KILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 40.7 bits (91), Expect = 0.015
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -3
Query: 265 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTL 134
+QPP R ++ EDVS+ HV+DD A + +EL HLS L
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSAL 99
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 39.9 bits (89), Expect = 0.026
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGP 205
R TQV+VEF+ +TSR IIRNVKGP
Sbjct: 23 RGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 37.5 bits (83), Expect = 0.14
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGP 205
R TQV+VEF+ + SR IIRNVKGP
Sbjct: 23 RGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 36.7 bits (81), Expect = 0.24
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 134 QCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 226
+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 29 EVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 34.7 bits (76), Expect = 0.97
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Frame = +2
Query: 128 RXQCTQVKVEFIGE-----TSRQIIRNVKGPVRDGDILT 229
R TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 53 RGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 34.3 bits (75), Expect = 1.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 104 KCLAVLVLRXQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 223
K L + R T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 11 KILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 34.3 bits (75), Expect = 1.3
Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +2
Query: 143 QVKVEFIG--ETSRQIIRNVKGPVRDGDIL 226
QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 30 QVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_Q4FPU6 Cluster: ABC efflux transporter, fused inner
membrane subunits; n=3; Psychrobacter|Rep: ABC efflux
transporter, fused inner membrane subunits -
Psychrobacter arcticum
Length = 882
Score = 33.5 bits (73), Expect = 2.2
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -3
Query: 235 KKSEDVSVTDGSFHV---SDDLTAGLPNELDLHLSTLXPENQYGQALSRHEQERWVYPFW 65
K ED+S TD + D + G+ +L STL + QALSR +RW+YP
Sbjct: 4 KNVEDISSTDNTDTTMARESDASGGIVRQL--LTSTLGLQGLGAQALSRSWWQRWIYPVL 61
Query: 64 LVISSLMQL 38
+++ + L
Sbjct: 62 FLLTLTLSL 70
>UniRef50_A0DRX9 Cluster: Chromosome undetermined scaffold_61, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_61,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 927
Score = 33.1 bits (72), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 1 CFSKHASFGARVLIALSSILQAKMDKPNVLARV 99
CFS + A +I LS LQ+K+ PN L +V
Sbjct: 159 CFSNNRDISANCIICLSEFLQSKLQNPNNLTQV 191
>UniRef50_A7IXQ7 Cluster: Putative uncharacterized protein b732L;
n=2; Chlorovirus|Rep: Putative uncharacterized protein
b732L - Paramecium bursaria Chlorella virus NY2A
(PBCV-NY2A)
Length = 76
Score = 32.7 bits (71), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 103 KVLGRTGSQGPVYSSEGRVHWGDQPSDHQKRER 201
K+ R G +S + R++W +PSD Q+R R
Sbjct: 7 KISSRLSESGREHSQQRRIYWASRPSDMQQRRR 39
>UniRef50_Q76K51 Cluster: O-acetyl-L-homoserine sulfhydrylase; n=4;
Thermus|Rep: O-acetyl-L-homoserine sulfhydrylase -
Thermus thermophilus
Length = 412
Score = 32.7 bits (71), Expect = 3.9
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -2
Query: 224 GCLRHGRVLSRF**SDGWS--PQ*TRPSLEYTGP*EPVRPSTFTTRARTLGLSILACNIE 51
G + G VLSR ++ W PQ +P L+ P E +R F R RTLGLS+ C +
Sbjct: 208 GSVLGGAVLSRE--TELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL--CGMA 263
Query: 50 LNAIN 36
L+ N
Sbjct: 264 LSPFN 268
>UniRef50_Q4JUB6 Cluster: Putative transcriptional regulator; n=1;
Corynebacterium jeikeium K411|Rep: Putative
transcriptional regulator - Corynebacterium jeikeium
(strain K411)
Length = 258
Score = 32.3 bits (70), Expect = 5.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 37 LIALSSILQAKMDKPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQKRER 201
L A+ ++ + + ++ K+ G Q P Y E R WGD P Q +E+
Sbjct: 100 LRAVEDLITTTRVEGYTMEQMDKIKQYFGEQMPAYQEEARERWGDTPEYQQSQEK 154
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 32.3 bits (70), Expect = 5.2
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 134 QCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 226
+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 35 EVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_UPI0000F2E808 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 207
Score = 31.9 bits (69), Expect = 6.8
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 40 IALSSILQAKMDKPNVLARV---VKVLGR--TGSQGPVYSSEGRVHWGDQPSDHQKRERT 204
+ L L+ ++ K N+ AR+ LGR TG G YS G ++GD+P ++ RE T
Sbjct: 71 LTLKDSLKQRLGKSNIRARLGWPYGTLGRKATGGWGGTYS--GSRYYGDEPQTYRGREET 128
>UniRef50_A7AQA8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 443
Score = 31.9 bits (69), Expect = 6.8
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = -3
Query: 199 FHVSDDLTAGLPNELDLHLSTLXPENQYGQALSRHEQERWVYPFWLVISSLM 44
F SDDL L + L+LHL+T EN + E E V PF L ISS++
Sbjct: 329 FRCSDDLREPLLSTLNLHLNTSMDENSSLELDEISESE--VAPFRLSISSVL 378
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 31.5 bits (68), Expect = 9.0
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1
Query: 219 SPSRTGPFTFLMI*RLVSPMNSTFT*VH 136
SP RTGP TF M RLVS ++ST T H
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAH 111
>UniRef50_Q55BQ3 Cluster: SCY1 family protein kinase; n=1;
Dictyostelium discoideum AX4|Rep: SCY1 family protein
kinase - Dictyostelium discoideum AX4
Length = 1125
Score = 31.5 bits (68), Expect = 9.0
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 10 KHASFGARVLIALSSILQAKMDKPNVLARVVKVL 111
K +F ++VL A+S+ILQ+K KP VL+ V++ L
Sbjct: 423 KKETFQSKVLPAISNILQSKEPKPEVLSCVLENL 456
>UniRef50_A2SQ20 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 320
Score = 31.5 bits (68), Expect = 9.0
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 232 KSEDVSVTDGSFH-VSDDLTAGLPNELDLHLSTLXPENQYGQALSRHEQERWVY 74
K D+S +DG+ + V D GL + LHL+T+ PE YGQ + + Q +Y
Sbjct: 36 KQVDISTSDGTIYTVRFDDEGGLNS---LHLTTI-PEEPYGQVTTTNRQTGTIY 85
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,013,571
Number of Sequences: 1657284
Number of extensions: 6136230
Number of successful extensions: 14603
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14599
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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