Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E09
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    50   2e-07
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    50   2e-07
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   3.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.3  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   9.7  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +2

Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 226
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 32.3 bits (70), Expect = 0.037
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 79  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +2

Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 226
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 32.3 bits (70), Expect = 0.037
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 79  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 109 ALSRHEQERWVYPFWLVISSLMQLTHVHQSWRVSK 5
           A+S+    RWVYPF +  S+L+  T  +Q  ++ K
Sbjct: 282 AISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYK 315


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 171 PAVRSSET*KDPSVTETSSLFLNLNVKL 254
           PAV SSET    S+T T S + + +V +
Sbjct: 209 PAVSSSETLTSVSITSTESAYTSSSVDI 236


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 190  SDDLTAGLPNELDLHLSTLXPENQYGQALSRHEQERWVYPFWLVISSLMQLTHVHQSWRV 11
            SDD+T+     L LHL T+ P   + Q       E  V  FWL +   + L ++  S + 
Sbjct: 1082 SDDMTSRRIERLCLHLKTVVP--LFEQCTKEVSAED-VTNFWLELVFTLLLVYIKLSLKG 1138

Query: 10   S 8
            S
Sbjct: 1139 S 1139


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 395 LCIYSELNTIKWSS 354
           LC+  + NT+KW+S
Sbjct: 622 LCVIGDSNTVKWAS 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,529
Number of Sequences: 5004
Number of extensions: 26135
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)