Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_E09
(459 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 59 6e-09
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 59 6e-09
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 59 6e-09
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 59 6e-09
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 59 6e-09
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 59 6e-09
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 59 6e-09
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 59 6e-09
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 180
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,517,335
Number of Sequences: 237096
Number of extensions: 880586
Number of successful extensions: 1861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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