Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E09
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 171 VSPMNSTFT*VHWXLRTSTAKHFH 100
           V P  S     HW    +  KHFH
Sbjct: 34  VPPEYSDLVRPHWRAFPAPGKHFH 57


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 302 FTCTIYINLCVKLT 343
           FTC I   +C KLT
Sbjct: 636 FTCNIMDAICTKLT 649


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 171 VSPMNSTFT*VHWXLRTSTAKHFH 100
           V P  S     HW    +  KHFH
Sbjct: 34  VPPEYSDLVHPHWRAFPAPGKHFH 57


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 238 FKKSEDVSVTDGSFHVSDDLT 176
           + KS+D+ V D S + S D+T
Sbjct: 118 YVKSDDIWVPDISVYNSGDMT 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,479
Number of Sequences: 438
Number of extensions: 1730
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)