Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_E09
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo... 46 1e-05
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi... 46 1e-05
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C) 45 3e-05
At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase... 31 0.49
At1g29820.1 68414.m03645 expressed protein 30 0.65
At4g21190.1 68417.m03064 pentatricopeptide (PPR) repeat-containi... 27 4.6
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 27 6.1
At1g17270.1 68414.m02103 expressed protein 27 8.1
>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
ribosomal protein S28, Arabidopsis thaliana,
EMBL:ATRP28A
Length = 64
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
R Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 20 RGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 70 MDKPNVLARVVKVLGRTGSQGPV 138
MD A VVKV+GRTGS+G V
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQV 23
>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
to ribosomal protein S28 GB:P34789 [Arabidopsis
thaliana]
Length = 64
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
R Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 20 RGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 70 MDKPNVLARVVKVLGRTGSQGPV 138
MD A VVKV+GRTGS+G V
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQV 23
>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
Length = 64
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +2
Query: 128 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
R Q TQV+V+F ++ R I+RNVKGPVR+GD+LT
Sbjct: 20 RGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 70 MDKPNVLARVVKVLGRTGSQGPV 138
MD A VVKV+GRTGS+G V
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQV 23
>At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase,
putative similar to SP|P48979 Polygalacturonase
precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
persica}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 392
Score = 30.7 bits (66), Expect = 0.49
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 229 SEDVSVTDGSFHVSDDLTAGLPNELDLHLSTL 134
S V+VTDG+FH DD + P +L++S L
Sbjct: 204 SAGVTVTDGTFHTGDDCISIGPGTRNLYMSKL 235
>At1g29820.1 68414.m03645 expressed protein
Length = 540
Score = 30.3 bits (65), Expect = 0.65
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 187 DDLTAGLPNELDLHLSTLXPENQYGQALSRHEQERWVYPFWLVISSLMQLTHVHQSW 17
DDL + + LD + L P + R+E WV W I+ L+Q+ V+ W
Sbjct: 85 DDLRSRSVSSLDFKEAHLLPSGH----VERYEGSHWVPIGWARITELVQMVQVNAEW 137
>At4g21190.1 68417.m03064 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 307
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 259 PPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLXPENQYGQALSRHEQE 86
PP + FR+ K V V + + GL ++ D + + E + G+ LS E++
Sbjct: 225 PPQWEFRYIKGRRVKVKAKQLNELSEGEGGLSSDEDKIDNEIESEEEDGEDLSEEEED 282
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 7 SKHASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQ 174
+K FG V + S IL ++D+P ++ +V +LG + + S GR+ G Q
Sbjct: 501 TKVGLFGVDVSLEGSVILCRQVDQPGMIGKVASILG-DENVNVSFMSVGRIAPGKQ 555
>At1g17270.1 68414.m02103 expressed protein
Length = 564
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 1 CFSKHASFGA---RVLIALSSILQAKMDKPNVLARVVKVLGRT 120
C KH F A RVL+ SS + DK + R+ LGRT
Sbjct: 232 CLEKHMFFAALLDRVLVIPSSKFDYQYDKVIDIERINTCLGRT 274
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,097,467
Number of Sequences: 28952
Number of extensions: 137418
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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