Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E08
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.083
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.0  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   4.1  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   7.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.2  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.5  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.083
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 164 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 334
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 475 AWPRSRLWFGWRGTFFILITG 413
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 94  CWNXFPRKYVSGLSWPAVAWRSR 162
           CWN +   Y +  S+P + W ++
Sbjct: 202 CWNEYITAYDNKFSFPEIGWNNK 224


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 198 CNNLPSAANVTSTRSPRDSRP*KPADIFAWKXVPA**KLFVRRHDSDDSTWNL 40
           C+NLPSA   TS  S           I A+  V A  +LF+ R+D   S W+L
Sbjct: 408 CSNLPSAVAFTSLLSAA-----AVPTIMAYAAV-AFGRLFLSRNDFPKSEWSL 454


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 236  FQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 400
            + E +    T    +F +D S     DL       ++NV+ + L+SF+ ++E L+
Sbjct: 1703 YNEFYSQLDTSTSDIF-QDTSVDGFPDL---QVSSDINVRNDRLSSFVMSSEDLR 1753


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 192 NLPSAANVTSTRSPRDSRP*KPADI 118
           ++P+A   +ST S RD  P  P D+
Sbjct: 349 SIPAAEPASSTTSARDQTPSTPKDV 373


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 188 RLLQAHKLVLSVCSPYFQEMFKMNPTQHPIV 280
           R+ ++ K + +VCS  +Q +   +PT  P V
Sbjct: 156 RIAESGKCLCTVCSCLYQGIISHSPTFRPFV 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,489
Number of Sequences: 5004
Number of extensions: 36469
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)