Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E08
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     119   2e-29
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         102   2e-24
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      26   0.29 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.38 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  119 bits (286), Expect = 2e-29
 Identities = 54/113 (47%), Positives = 78/113 (69%)
 Frame = +2

Query: 77  TNNFHYAGTXFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKM 256
           T +F      + +++++ F  L    D VDVTLA +GR L+AH++VLS CSPYF+E+ K 
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKS 63

Query: 257 NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLT 415
            P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 64  TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  102 bits (245), Expect = 2e-24
 Identities = 48/103 (46%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
 Frame = +2

Query: 107 FHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHP-IVF 283
           + +NM++ FH LL     VDVTLA     L+AHK+VLS CS YFQ++   NP +HP I+ 
Sbjct: 18  YQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIM 77

Query: 284 LKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 412
            +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 78  PQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 77  TNNFHYAGTXFHANMSAGFHGLLSRGDLVDVTLAAE 184
           T +F      + +++++ F  L    D VDVTLA E
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 317 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 433
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 435 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 337
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 26/107 (24%), Positives = 42/107 (39%)
 Frame = +2

Query: 65  SWRRTNNFHYAGTXFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQE 244
           SWR T+NF Y    +      GF+     G L  ++L+A       +K++      YF  
Sbjct: 209 SWRITHNFFYFDPRYGNYNINGFNFQWKDG-LFGLSLSA--LQTDGYKIL------YFHA 259

Query: 245 MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFIST 385
           M  +         L+D +     D   F ++GE     +  +S I T
Sbjct: 260 MSSIAEFSVSTEVLQDHTLEKSNDYYAFHFEGEKGPNSQGPSSVIDT 306


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 44  FHVESSLSWRRTNNFHY 94
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -2

Query: 498 CLCCDDL-GPG 469
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 86  NCSSDAMIATTRRGTYPKLCTYNS 15
           NC  D +    +RGT  + C + +
Sbjct: 479 NCDIDCINRVVQRGTKMQFCIFRT 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,574
Number of Sequences: 438
Number of extensions: 2396
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)