Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_E04
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.54 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +3

Query: 483  LERAGD**ETGAQDQGRLRRL---REEHPGGDQED 578
            + RAG   E   +D  +L R    RE H GG QED
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQED 1437


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 328 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQES-QKLAKKVSSNVQETN 504
           +EQ  QN++   +     H  ++KNA    +K    +  ++Q+S +KL  K  S   E  
Sbjct: 48  MEQDDQNLKCYLKCFMTKHGILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNEDP 107

Query: 505 EKLAPKIKAAYDDF 546
            + A ++   Y +F
Sbjct: 108 CEKAYQLVKCYVEF 121


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +2

Query: 125 FKDIEHHTKXVP*DFRTTV*LAHQVKGRTGLQQGLEGRLRVRAATAQRLRQESPGXRSET 304
           +K +E HT+      R    +    K    L+QG++  L +  A     R  SP   +E+
Sbjct: 332 YKQLELHTED-----RAAESILEPAKKGFKLKQGIQFHLYINTAPCGDARIFSPHEENES 386

Query: 305 RTARPRR 325
               P R
Sbjct: 387 VDKHPNR 393


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 241 EPSFQALLKSCASFDLVSELN 179
           EP    +  + ASFD +SE+N
Sbjct: 59  EPLLVGMDLTIASFDAISEVN 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.125    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,550
Number of Sequences: 438
Number of extensions: 1803
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)