Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 266 3e-72
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 130 1e-31
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 122 5e-29
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 113 2e-26
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 113 2e-26
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 83 3e-17
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 83 4e-17
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 79 4e-16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 72 8e-14
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 69 4e-13
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 69 4e-13
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 63 3e-11
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 58 8e-10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 52 7e-08
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 50 3e-07
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 49 7e-07
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 49 7e-07
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 49 7e-07
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 46 5e-06
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 41 1e-04
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 36 0.005
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.027
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 33 0.036
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.063
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.44
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 29 0.44
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.59
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 28 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 1.8
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 3.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 4.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.1
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 5.5
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 7.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.5
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.5
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 266 bits (651), Expect = 3e-72
Identities = 123/179 (68%), Positives = 152/179 (84%)
Frame = +1
Query: 118 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 297
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVLKQL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63
Query: 298 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 477
E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVYNMS
Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123
Query: 478 EDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
EDPGD+++ +GGL EQIR+LREVIELPL NPELF+RVGI PPKG LLYGPPGTGKTLL
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLL 182
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 130 bits (315), Expect = 1e-31
Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 4/182 (2%)
Frame = +1
Query: 121 EKAFQDYRKKLMEHK----EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 288
E Q Y +K+ + + + L+ Q L + +++ LQ G VGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 289 KQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 468
K + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 469 MSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 648
M E D TY +GGL++QI++++EVIELP+ +PELF +GI PKG LLYGPPGTGKT
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKT 193
Query: 649 LL 654
LL
Sbjct: 194 LL 195
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 122 bits (294), Expect = 5e-29
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Frame = +1
Query: 142 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 315
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L+ + + I
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAI 71
Query: 316 VKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 495
V +T G YVV LD+ LK VAL + ++ LP E D + + ++ DV
Sbjct: 72 VGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
Query: 496 TYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+Y +GGL Q +++RE +ELPL +L+ ++GI PP+G LLYGPPGTGKT+L
Sbjct: 132 SYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTML 184
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 113 bits (273), Expect = 2e-26
Identities = 56/170 (32%), Positives = 99/170 (58%)
Frame = +1
Query: 145 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 324
+++ +H +E + +++LK ++ + N + ++ VG L+++ ++ + +
Sbjct: 73 QRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVG-TLEEIIDDDHAIVS 131
Query: 325 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYX 504
T GP Y V +DK+ L+ G V L ++I+ L + DP++ M + +Y
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYA 191
Query: 505 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
IGGL+ QI++++E +ELPL +PEL+ +GI PPKG +LYG PGTGKTLL
Sbjct: 192 DIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 241
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 113 bits (272), Expect = 2e-26
Identities = 52/114 (45%), Positives = 73/114 (64%)
Frame = +1
Query: 310 FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPG 489
+++ ++VV ++ ++ G RV D I LP ++DP V M E+
Sbjct: 115 YVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKP 174
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTL 651
DVTY +GG +EQI +LREV+ELPL++PE FV++GI PPKG +LYGPPGTGKTL
Sbjct: 175 DVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTL 228
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 83.0 bits (196), Expect = 3e-17
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 484 PGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
P VT+ +IGGLQ QI Q+R+++ELP NPELF I PP+G LLYGPPGTGKT++
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMV 329
Score = 61.7 bits (143), Expect = 9e-11
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +1
Query: 478 EDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTL 651
E P +V + IGG +E ++L+E +E PL + E F R+G+ PPKG LLYGPPG KT+
Sbjct: 541 ESP-NVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTI 597
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 82.6 bits (195), Expect = 4e-17
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = +1
Query: 364 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLR 543
++ +L G + ++ + I+ LP E D V M ++ Y IGGL +QI +L
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELF 198
Query: 544 EVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
E I LP+ + F ++G+ PPKGCL++GPPGTGKTLL
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLL 235
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 79.4 bits (187), Expect = 4e-16
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +1
Query: 445 EVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLY 624
E +P+ +V Y IGG + Q+ Q+RE++ELPL +P+LF +GI PP+G L+Y
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMY 264
Query: 625 GPPGTGKTLL 654
GPPGTGKTL+
Sbjct: 265 GPPGTGKTLM 274
Score = 72.1 bits (169), Expect = 6e-14
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V + IGGL+E R+LRE +++P+M E F+R G+TP KG L +GPPGTGKTLL
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 71.7 bits (168), Expect = 8e-14
Identities = 29/55 (52%), Positives = 45/55 (81%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
++ + +IGGL++ I QL+E++ LPL+ PE+F+ + ITPP+G L +GPPGTGKTL+
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLM 422
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 69.3 bits (162), Expect = 4e-13
Identities = 27/54 (50%), Positives = 41/54 (75%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+++ ++GGL I QL+E++ LPL+ PE+F R + PP+G L +GPPGTGKTL+
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLM 316
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 103 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 228
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 69.3 bits (162), Expect = 4e-13
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 472 SHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTL 651
+ E P D++ IGGL + I +L E++ +P+ +PE++ GI PP+G LL+GPPG GKT+
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTM 223
Query: 652 L 654
L
Sbjct: 224 L 224
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/57 (49%), Positives = 37/57 (64%)
Frame = +1
Query: 484 PGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
PG V++ IG L+ +L+ I P+ PEL+ VGI+ P G LL+GPPG GKTLL
Sbjct: 487 PG-VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLL 542
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
V + IGGL+E LR+ ++LPL PELF + G+ P G LLYGPPGTGKTLL
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLL 704
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 58.4 bits (135), Expect = 8e-10
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVG--ITPPKGCLLYGPPGTGKTLL 654
DV++ IGG+ E + QL + + PL PE+F G ++ PKG LLYGPPG GKT+L
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTML 141
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +1
Query: 472 SHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTL 651
+HE + + + G+ E ++ E ++ L NP+ + R+G P+G +L GPPGTGKTL
Sbjct: 286 NHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTL 344
Query: 652 L 654
L
Sbjct: 345 L 345
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +1
Query: 469 MSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 648
+S+ +P V + I GL + L+E + P + PELF + P +G LL+GPPGTGKT
Sbjct: 370 ISNHEP--VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKT 426
Query: 649 LL 654
+L
Sbjct: 427 ML 428
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V + I GL+ L+E + LP+ P+LF G P G LLYGPPGTGK+ L
Sbjct: 125 NVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYL 178
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V + I GL+ L+E + P + P+LF + P +G LL+GPPGTGKT+L
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTML 508
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V + + G+ E +L E+++ L +P F R+G P+G LL GPPGTGKT+L
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTML 316
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 508 IGGLQEQIRQL-REVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
IGGL + + R L P + ++GI KG LLYGPPGTGKTL+
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLI 320
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + I G+QE +R++IE P+ ++ + + P G LL+G PG GKT L
Sbjct: 603 IRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYL 656
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +1
Query: 91 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 270
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 271 IVGEVLKQLTEEKFIVK 321
GEVL+Q+ E K
Sbjct: 591 QKGEVLEQVVAESEAAK 607
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 258
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 33.1 bits (72), Expect = 0.036
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 562 LMNPELFVRVGITPPKGCLLYGPPGTGKT 648
L N + + GI +G LLYGPPG+GKT
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKT 256
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.063
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 121 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 246
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 112 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 261
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.5 bits (63), Expect = 0.44
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = -1
Query: 615 TSFGWSDTDSNKQLWVH*GKFNHLSQLSNLFLKTSYGGIGHVTRI-LMTHVVN*GINLSR 439
TSFG+++ +SN+Q L L++ + Y G G TR+ L+T V N G+
Sbjct: 179 TSFGFAEFESNEQF------SRALEALNDFVVPPLYEG-GPSTRLSLITDVENEGLYREW 231
Query: 438 QMSHYCKSSHVEGNSCSSFKLVLVKL 361
Q S Y ++ E N + L ++
Sbjct: 232 QTSRYARNKQKEINILQQIRFNLERI 257
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 276
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 277 GE 282
E
Sbjct: 463 SE 464
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +1
Query: 412 TTLTIMRHLPREVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRV 591
T L R +P + L Y + DV+ Q+ I ++ + + + V+
Sbjct: 166 TMLEFKRSIPEYRNSLFYTLIGRKKADVSID-----QKLIGDIKYFNKELNASQKKAVKF 220
Query: 592 GITPPKGCLLYGPPGTGKT 648
I + L++GPPGTGKT
Sbjct: 221 SIAVKELSLIHGPPGTGKT 239
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 157 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 294
E + +R+ + ++Q+KDL+ D DL+ L+S+ V + K+
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKE 1661
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 616 LLYGPPGTGKT 648
L YGPPGTGKT
Sbjct: 60 LFYGPPGTGKT 70
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 139 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 303
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q + LK++ E
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI-RSLKEMEE 141
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 272 ICPTLCKAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 126
+ PTL + RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 583 VRVGITPPKGCLLYGPPGTGKTL 651
VR ++ P L+ GPPGTGKT+
Sbjct: 401 VRAVLSKPLS-LIQGPPGTGKTV 422
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 193 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVL-KQLTEEKFIVKAT 327
RD+L+DL+++ + +NDL+ L Q+V E++ LT+ K I++ +
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 604 PKGCLLYGPPGTGKTLL 654
PKG LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 103 DMEPLREKAFQDYRKKLMEHKEV 171
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 295 AVSRLLQLFVQHFVRLSGHFHSCHIVWSNLLV 200
A + +LQL ++H R++ + H+ + NL V
Sbjct: 864 AHAEILQLIIRHLARVAAYSHANRMTSKNLAV 895
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 580 FVRVGITPPKGCLLYGPPGTGKTLL 654
F+ +T + + GPPG+GK++L
Sbjct: 2505 FLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 647 VFPVPGGPYSKHPLGGVIPTRTNSSGFIR 561
V P P G S+ P + P RT +GFI+
Sbjct: 131 VQPQPTGFMSQQPASFMQPQRTGGAGFIQ 159
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 616 LLYGPPGTGKT 648
L+ GPPGTGKT
Sbjct: 1290 LIQGPPGTGKT 1300
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 100 SDMEPLREKAFQDYRKKLME-HKEV-ESRLKEGRDQLKDLTKQYDKSENDLKA 252
S ++ + KA ++ RK+ E KE+ +SRL+E + K L K + ++LKA
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 616 LLYGPPGTGKT 648
L+ GPPGTGKT
Sbjct: 1149 LIQGPPGTGKT 1159
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 601 PPKGCLLYGPPGTGKTLL 654
PP + GPPGTGK+ L
Sbjct: 73 PPVIVAVMGPPGTGKSTL 90
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.5
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 115 LREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSE-----NDLKALQSVGQIVG 279
LRE FQ + K + + L RDQ+ DLTK E N LK + S ++
Sbjct: 17 LRENVFQPVIDE--RTKRLSAHL---RDQVNDLTKSSSSKEEGIADNSLKEVSS-SEVSD 70
Query: 280 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTR 396
V ++ + K +T+GPR R + K LK G R
Sbjct: 71 NVGMEVDQPKV---STSGPR--DNNRNKWAKKHLKKGKR 104
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 142 RKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 252
R +L++ + KE D LK +YD+ EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,317
Number of Sequences: 5004
Number of extensions: 48498
Number of successful extensions: 223
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -